Hb_004429_090

Information

Type -
Description -
Location Contig4429: 62765-66016
Sequence    

Annotation

kegg
ID rcu:RCOM_1620520
description RNA binding protein, putative
nr
ID XP_012067791.1
description PREDICTED: ras GTPase-activating protein-binding protein 1-like isoform X1 [Jatropha curcas]
swissprot
ID P97855
description Ras GTPase-activating protein-binding protein 1 OS=Mus musculus GN=G3bp1 PE=1 SV=1
trembl
ID A0A067LB42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15721 PE=4 SV=1
Gene Ontology
ID GO:0005622
description nuclear transport factor 2 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42742: 62787-67199
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004429_090 0.0 - - PREDICTED: ras GTPase-activating protein-binding protein 1-like isoform X1 [Jatropha curcas]
2 Hb_001104_230 0.0845053311 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
3 Hb_010560_050 0.0951678675 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
4 Hb_001369_250 0.0988757588 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
5 Hb_001476_060 0.1072104523 - - PREDICTED: uncharacterized protein At5g01610 [Jatropha curcas]
6 Hb_000684_520 0.1094350195 - - glutathione S-transferase L3-like [Jatropha curcas]
7 Hb_001623_060 0.1127700172 - - potassium channel beta, putative [Ricinus communis]
8 Hb_002675_140 0.1143070699 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
9 Hb_001085_240 0.114522367 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
10 Hb_003633_050 0.114748969 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
11 Hb_001332_040 0.1158393879 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
12 Hb_000286_060 0.1168109588 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]
13 Hb_003994_120 0.1171682442 - - PREDICTED: uncharacterized protein LOC105130433 isoform X1 [Populus euphratica]
14 Hb_006538_090 0.1195126327 - - PREDICTED: IST1 homolog [Jatropha curcas]
15 Hb_000025_190 0.1222969427 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
16 Hb_007545_120 0.1240168974 - - NADH:cytochrome b5 reductase [Vernicia fordii]
17 Hb_004880_150 0.1262812878 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
18 Hb_001221_020 0.1274935372 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
19 Hb_003041_050 0.127704276 - - -
20 Hb_000115_150 0.1280117375 - - PREDICTED: IST1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_004429_090 Hb_004429_090 Hb_001104_230 Hb_001104_230 Hb_004429_090--Hb_001104_230 Hb_010560_050 Hb_010560_050 Hb_004429_090--Hb_010560_050 Hb_001369_250 Hb_001369_250 Hb_004429_090--Hb_001369_250 Hb_001476_060 Hb_001476_060 Hb_004429_090--Hb_001476_060 Hb_000684_520 Hb_000684_520 Hb_004429_090--Hb_000684_520 Hb_001623_060 Hb_001623_060 Hb_004429_090--Hb_001623_060 Hb_000025_190 Hb_000025_190 Hb_001104_230--Hb_000025_190 Hb_001221_020 Hb_001221_020 Hb_001104_230--Hb_001221_020 Hb_003776_060 Hb_003776_060 Hb_001104_230--Hb_003776_060 Hb_062537_010 Hb_062537_010 Hb_001104_230--Hb_062537_010 Hb_004880_150 Hb_004880_150 Hb_001104_230--Hb_004880_150 Hb_002631_010 Hb_002631_010 Hb_010560_050--Hb_002631_010 Hb_010560_050--Hb_000025_190 Hb_000700_040 Hb_000700_040 Hb_010560_050--Hb_000700_040 Hb_003633_050 Hb_003633_050 Hb_010560_050--Hb_003633_050 Hb_001085_240 Hb_001085_240 Hb_010560_050--Hb_001085_240 Hb_000286_060 Hb_000286_060 Hb_010560_050--Hb_000286_060 Hb_002675_140 Hb_002675_140 Hb_001369_250--Hb_002675_140 Hb_010174_150 Hb_010174_150 Hb_001369_250--Hb_010174_150 Hb_000555_100 Hb_000555_100 Hb_001369_250--Hb_000555_100 Hb_001369_250--Hb_010560_050 Hb_002357_060 Hb_002357_060 Hb_001369_250--Hb_002357_060 Hb_000665_050 Hb_000665_050 Hb_001369_250--Hb_000665_050 Hb_001476_060--Hb_002675_140 Hb_001476_060--Hb_001369_250 Hb_001476_060--Hb_001104_230 Hb_000034_070 Hb_000034_070 Hb_001476_060--Hb_000034_070 Hb_001104_100 Hb_001104_100 Hb_001476_060--Hb_001104_100 Hb_001510_020 Hb_001510_020 Hb_000684_520--Hb_001510_020 Hb_168893_020 Hb_168893_020 Hb_000684_520--Hb_168893_020 Hb_000684_520--Hb_010560_050 Hb_000187_040 Hb_000187_040 Hb_000684_520--Hb_000187_040 Hb_000210_060 Hb_000210_060 Hb_000684_520--Hb_000210_060 Hb_186982_040 Hb_186982_040 Hb_001623_060--Hb_186982_040 Hb_000015_030 Hb_000015_030 Hb_001623_060--Hb_000015_030 Hb_006816_260 Hb_006816_260 Hb_001623_060--Hb_006816_260 Hb_000538_120 Hb_000538_120 Hb_001623_060--Hb_000538_120 Hb_000136_350 Hb_000136_350 Hb_001623_060--Hb_000136_350 Hb_004109_340 Hb_004109_340 Hb_001623_060--Hb_004109_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.11653 3.0878 5.92851 14.1044 3.96465 2.54084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.49533 10.219 6.82774 16.1877 5.06871

CAGE analysis