Hb_004429_110

Information

Type -
Description -
Location Contig4429: 106237-110033
Sequence    

Annotation

kegg
ID pvu:PHAVU_003G041500g
description hypothetical protein
nr
ID XP_011018777.1
description PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
swissprot
ID Q9LE54
description Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1
trembl
ID V7C897
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G041500g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004429_110 0.0 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
2 Hb_000454_180 0.1178514681 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
3 Hb_004735_050 0.1242125586 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
4 Hb_006588_080 0.1328606309 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
5 Hb_000617_110 0.1389734428 - - translationally controlled tumor protein [Hevea brasiliensis]
6 Hb_001105_090 0.1395867255 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
7 Hb_000635_080 0.1403645465 - - 60S ribosomal protein L17A [Hevea brasiliensis]
8 Hb_004545_130 0.1431813933 - - uncharacterized protein LOC100305465 [Glycine max]
9 Hb_100180_010 0.1438601078 - - PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
10 Hb_000879_210 0.1440719951 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
11 Hb_009778_040 0.1455751081 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
12 Hb_008748_020 0.1509688951 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
13 Hb_000431_160 0.1536829874 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
14 Hb_000500_210 0.1550844847 - - -
15 Hb_005245_070 0.1552597441 - - PREDICTED: uncharacterized protein LOC105643658 [Jatropha curcas]
16 Hb_002316_120 0.1557013221 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
17 Hb_000789_110 0.1559589436 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
18 Hb_002248_100 0.155968562 - - hypothetical protein VITISV_027197 [Vitis vinifera]
19 Hb_007313_080 0.1568406598 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
20 Hb_001377_380 0.1569385957 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]

Gene co-expression network

sample Hb_004429_110 Hb_004429_110 Hb_000454_180 Hb_000454_180 Hb_004429_110--Hb_000454_180 Hb_004735_050 Hb_004735_050 Hb_004429_110--Hb_004735_050 Hb_006588_080 Hb_006588_080 Hb_004429_110--Hb_006588_080 Hb_000617_110 Hb_000617_110 Hb_004429_110--Hb_000617_110 Hb_001105_090 Hb_001105_090 Hb_004429_110--Hb_001105_090 Hb_000635_080 Hb_000635_080 Hb_004429_110--Hb_000635_080 Hb_000599_280 Hb_000599_280 Hb_000454_180--Hb_000599_280 Hb_003057_020 Hb_003057_020 Hb_000454_180--Hb_003057_020 Hb_000454_180--Hb_006588_080 Hb_007313_080 Hb_007313_080 Hb_000454_180--Hb_007313_080 Hb_011377_020 Hb_011377_020 Hb_000454_180--Hb_011377_020 Hb_007120_090 Hb_007120_090 Hb_000454_180--Hb_007120_090 Hb_004735_050--Hb_006588_080 Hb_004007_180 Hb_004007_180 Hb_004735_050--Hb_004007_180 Hb_004735_050--Hb_000635_080 Hb_000878_020 Hb_000878_020 Hb_004735_050--Hb_000878_020 Hb_002316_120 Hb_002316_120 Hb_004735_050--Hb_002316_120 Hb_008748_020 Hb_008748_020 Hb_004735_050--Hb_008748_020 Hb_006588_080--Hb_000878_020 Hb_006588_080--Hb_000635_080 Hb_120823_010 Hb_120823_010 Hb_006588_080--Hb_120823_010 Hb_006588_080--Hb_002316_120 Hb_000172_420 Hb_000172_420 Hb_006588_080--Hb_000172_420 Hb_000431_160 Hb_000431_160 Hb_000617_110--Hb_000431_160 Hb_004545_130 Hb_004545_130 Hb_000617_110--Hb_004545_130 Hb_000819_070 Hb_000819_070 Hb_000617_110--Hb_000819_070 Hb_044653_060 Hb_044653_060 Hb_000617_110--Hb_044653_060 Hb_000879_210 Hb_000879_210 Hb_000617_110--Hb_000879_210 Hb_000617_110--Hb_000635_080 Hb_009778_040 Hb_009778_040 Hb_001105_090--Hb_009778_040 Hb_001105_090--Hb_007313_080 Hb_001105_090--Hb_120823_010 Hb_000809_060 Hb_000809_060 Hb_001105_090--Hb_000809_060 Hb_002081_030 Hb_002081_030 Hb_001105_090--Hb_002081_030 Hb_001377_380 Hb_001377_380 Hb_000635_080--Hb_001377_380 Hb_000780_210 Hb_000780_210 Hb_000635_080--Hb_000780_210 Hb_002248_100 Hb_002248_100 Hb_000635_080--Hb_002248_100 Hb_000635_080--Hb_004545_130 Hb_000635_080--Hb_002316_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.54348 3.97684 5.2417 19.1815 2.62287 8.56399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.7583 105.03 15.9348 17.2888 4.25216

CAGE analysis