Hb_004435_020

Information

Type -
Description -
Location Contig4435: 10298-12614
Sequence    

Annotation

kegg
ID pda:103705349
description tubulin alpha chain
nr
ID XP_012093180.1
description PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
swissprot
ID Q6VAG0
description Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1
trembl
ID A0A067L806
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16385 PE=3 SV=1
Gene Ontology
ID GO:0005737
description tubulin alpha chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42752: 10300-12593
cDNA
(Sanger)
(ID:Location)		 001_A24.ab1: 11256-12593 , 004_H09.ab1: 10303-10514 , 006_E07.ab1: 11257-12593 , 024_J24.ab1: 11269-12593 , 034_L17.ab1: 11221-12593 , 041_D10.ab1: 11322-12600

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004435_020 0.0 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
2 Hb_000878_050 0.0606235916 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
3 Hb_005976_110 0.0711783451 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
4 Hb_010407_130 0.0712893798 - - hypothetical protein POPTR_0008s16680g [Populus trichocarpa]
5 Hb_000103_450 0.0713176185 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
6 Hb_001095_020 0.0716376231 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
7 Hb_007811_020 0.0719963944 - - PREDICTED: expansin-A6 [Jatropha curcas]
8 Hb_001544_090 0.0815378755 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
9 Hb_007218_040 0.0816585111 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
10 Hb_000392_110 0.0840590512 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
11 Hb_001674_010 0.0910279798 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
12 Hb_000483_450 0.0937124646 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
13 Hb_001541_130 0.0941073672 - - GDSL esterase/lipase [Morus notabilis]
14 Hb_000003_280 0.094874276 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000028_190 0.0970611871 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
16 Hb_005542_120 0.0983613671 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
17 Hb_168918_010 0.098847318 - - pectin acetylesterase, putative [Ricinus communis]
18 Hb_001159_230 0.0991493956 - - Kinesin heavy chain, putative [Ricinus communis]
19 Hb_007617_010 0.0995514756 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
20 Hb_004223_060 0.0998312246 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]

Gene co-expression network

sample Hb_004435_020 Hb_004435_020 Hb_000878_050 Hb_000878_050 Hb_004435_020--Hb_000878_050 Hb_005976_110 Hb_005976_110 Hb_004435_020--Hb_005976_110 Hb_010407_130 Hb_010407_130 Hb_004435_020--Hb_010407_130 Hb_000103_450 Hb_000103_450 Hb_004435_020--Hb_000103_450 Hb_001095_020 Hb_001095_020 Hb_004435_020--Hb_001095_020 Hb_007811_020 Hb_007811_020 Hb_004435_020--Hb_007811_020 Hb_005542_120 Hb_005542_120 Hb_000878_050--Hb_005542_120 Hb_000392_110 Hb_000392_110 Hb_000878_050--Hb_000392_110 Hb_000003_280 Hb_000003_280 Hb_000878_050--Hb_000003_280 Hb_004223_060 Hb_004223_060 Hb_000878_050--Hb_004223_060 Hb_007904_280 Hb_007904_280 Hb_000878_050--Hb_007904_280 Hb_001544_090 Hb_001544_090 Hb_005976_110--Hb_001544_090 Hb_005976_110--Hb_001095_020 Hb_005976_110--Hb_000878_050 Hb_000680_170 Hb_000680_170 Hb_005976_110--Hb_000680_170 Hb_000032_420 Hb_000032_420 Hb_005976_110--Hb_000032_420 Hb_010407_130--Hb_000103_450 Hb_006846_040 Hb_006846_040 Hb_010407_130--Hb_006846_040 Hb_010407_130--Hb_000003_280 Hb_010407_130--Hb_000392_110 Hb_000483_450 Hb_000483_450 Hb_010407_130--Hb_000483_450 Hb_053264_010 Hb_053264_010 Hb_000103_450--Hb_053264_010 Hb_000103_450--Hb_006846_040 Hb_001047_090 Hb_001047_090 Hb_000103_450--Hb_001047_090 Hb_012653_050 Hb_012653_050 Hb_000103_450--Hb_012653_050 Hb_001674_010 Hb_001674_010 Hb_001095_020--Hb_001674_010 Hb_002150_090 Hb_002150_090 Hb_001095_020--Hb_002150_090 Hb_000028_190 Hb_000028_190 Hb_001095_020--Hb_000028_190 Hb_007163_100 Hb_007163_100 Hb_001095_020--Hb_007163_100 Hb_001541_130 Hb_001541_130 Hb_001095_020--Hb_001541_130 Hb_007811_020--Hb_001544_090 Hb_007218_040 Hb_007218_040 Hb_007811_020--Hb_007218_040 Hb_007811_020--Hb_000878_050 Hb_007811_020--Hb_000392_110 Hb_007811_020--Hb_001541_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7086 38.5306 505.366 797.869 2.83603 2.05161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.39841 0.841355 3.01158 44.4206 397.528

CAGE analysis