Hb_004440_020

Information

Type -
Description -
Location Contig4440: 26593-28978
Sequence    

Annotation

kegg
ID rcu:RCOM_0536690
description AP-3 complex subunit sigma-1, putative
nr
ID XP_002521592.1
description AP-3 complex subunit sigma-1, putative [Ricinus communis]
swissprot
ID Q8VZ37
description AP-3 complex subunit sigma OS=Arabidopsis thaliana GN=At3g50860 PE=2 SV=1
trembl
ID B9S6H3
description AP-3 complex subunit sigma-1, putative OS=Ricinus communis GN=RCOM_0536690 PE=4 SV=1
Gene Ontology
ID GO:0005794
description ap-3 complex subunit sigma

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42761: 26677-28954 , PASA_asmbl_42762: 26670-28975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004440_020 0.0 - - AP-3 complex subunit sigma-1, putative [Ricinus communis]
2 Hb_107879_010 0.0871843137 - - phosphoglycerate mutase, putative [Ricinus communis]
3 Hb_000690_160 0.0889327963 - - PREDICTED: uncharacterized protein LOC105121500 [Populus euphratica]
4 Hb_001195_460 0.0916024058 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
5 Hb_002876_220 0.093721991 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
6 Hb_003077_020 0.0941725162 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_012022_150 0.0986278824 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
8 Hb_000869_020 0.0990990364 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
9 Hb_000110_310 0.0999505998 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
10 Hb_001946_140 0.1014280293 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
11 Hb_000163_100 0.1016993314 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
12 Hb_007975_060 0.1024897405 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
13 Hb_004619_080 0.1029550787 - - hypothetical protein PRUPE_ppa011369mg [Prunus persica]
14 Hb_000413_240 0.1037080752 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
15 Hb_002946_190 0.1051530122 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
16 Hb_000051_060 0.107758356 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003513_010 0.1083846051 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
18 Hb_002304_150 0.1088796129 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
19 Hb_002874_180 0.1090437957 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
20 Hb_000003_780 0.1091738668 - - hexokinase [Manihot esculenta]

Gene co-expression network

sample Hb_004440_020 Hb_004440_020 Hb_107879_010 Hb_107879_010 Hb_004440_020--Hb_107879_010 Hb_000690_160 Hb_000690_160 Hb_004440_020--Hb_000690_160 Hb_001195_460 Hb_001195_460 Hb_004440_020--Hb_001195_460 Hb_002876_220 Hb_002876_220 Hb_004440_020--Hb_002876_220 Hb_003077_020 Hb_003077_020 Hb_004440_020--Hb_003077_020 Hb_012022_150 Hb_012022_150 Hb_004440_020--Hb_012022_150 Hb_000227_170 Hb_000227_170 Hb_107879_010--Hb_000227_170 Hb_000270_680 Hb_000270_680 Hb_107879_010--Hb_000270_680 Hb_001472_100 Hb_001472_100 Hb_107879_010--Hb_001472_100 Hb_000579_120 Hb_000579_120 Hb_107879_010--Hb_000579_120 Hb_000110_310 Hb_000110_310 Hb_107879_010--Hb_000110_310 Hb_003513_010 Hb_003513_010 Hb_107879_010--Hb_003513_010 Hb_000866_010 Hb_000866_010 Hb_000690_160--Hb_000866_010 Hb_000753_240 Hb_000753_240 Hb_000690_160--Hb_000753_240 Hb_075751_010 Hb_075751_010 Hb_000690_160--Hb_075751_010 Hb_006817_010 Hb_006817_010 Hb_000690_160--Hb_006817_010 Hb_000768_170 Hb_000768_170 Hb_000690_160--Hb_000768_170 Hb_001935_100 Hb_001935_100 Hb_001195_460--Hb_001935_100 Hb_001195_460--Hb_107879_010 Hb_001195_460--Hb_000227_170 Hb_029866_120 Hb_029866_120 Hb_001195_460--Hb_029866_120 Hb_000051_060 Hb_000051_060 Hb_001195_460--Hb_000051_060 Hb_003029_070 Hb_003029_070 Hb_002876_220--Hb_003029_070 Hb_000300_180 Hb_000300_180 Hb_002876_220--Hb_000300_180 Hb_002876_220--Hb_012022_150 Hb_007002_020 Hb_007002_020 Hb_002876_220--Hb_007002_020 Hb_002876_220--Hb_000051_060 Hb_002876_220--Hb_001935_100 Hb_146673_010 Hb_146673_010 Hb_003077_020--Hb_146673_010 Hb_018133_020 Hb_018133_020 Hb_003077_020--Hb_018133_020 Hb_004157_020 Hb_004157_020 Hb_003077_020--Hb_004157_020 Hb_012114_070 Hb_012114_070 Hb_003077_020--Hb_012114_070 Hb_000599_260 Hb_000599_260 Hb_003077_020--Hb_000599_260 Hb_003728_060 Hb_003728_060 Hb_003077_020--Hb_003728_060 Hb_022693_140 Hb_022693_140 Hb_012022_150--Hb_022693_140 Hb_000224_160 Hb_000224_160 Hb_012022_150--Hb_000224_160 Hb_002163_040 Hb_002163_040 Hb_012022_150--Hb_002163_040 Hb_012022_150--Hb_003029_070 Hb_000804_040 Hb_000804_040 Hb_012022_150--Hb_000804_040 Hb_012022_150--Hb_000753_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.5273 9.20022 55.8235 31.9685 21.5396 30.1009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.749 40.2482 27.1287 13.3129 41.549

CAGE analysis