Hb_004440_040

Information

Type -
Description -
Location Contig4440: 52625-59581
Sequence    

Annotation

kegg
ID rcu:RCOM_0535970
description ubiquitin-protein ligase, putative
nr
ID XP_002521570.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID O23225
description U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5 PE=3 SV=3
trembl
ID B9S6F1
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0535970 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42763: 52417-59727
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004440_040 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_011930_110 0.0741971164 - - PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Jatropha curcas]
3 Hb_000347_120 0.0762182737 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
4 Hb_002263_040 0.0851694327 - - carbon catabolite repressor protein, putative [Ricinus communis]
5 Hb_002636_100 0.0905477695 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
6 Hb_003055_060 0.0909104392 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
7 Hb_001766_020 0.0936695883 - - PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]
8 Hb_003728_040 0.0952945675 - - PREDICTED: uncharacterized protein LOC101492305 [Cicer arietinum]
9 Hb_000442_010 0.0966443231 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
10 Hb_000977_120 0.0983479501 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
11 Hb_000832_030 0.0999644736 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634915 [Jatropha curcas]
12 Hb_000373_100 0.0999816106 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
13 Hb_000243_250 0.1011478063 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
14 Hb_001828_130 0.1015153878 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
15 Hb_000796_180 0.1034972567 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
16 Hb_116086_010 0.1042038429 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
17 Hb_000256_140 0.105626371 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
18 Hb_000169_130 0.1075697901 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
19 Hb_009393_220 0.108095772 transcription factor TF Family: Tify JAZ11 [Hevea brasiliensis]
20 Hb_009150_020 0.1094936532 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]

Gene co-expression network

sample Hb_004440_040 Hb_004440_040 Hb_011930_110 Hb_011930_110 Hb_004440_040--Hb_011930_110 Hb_000347_120 Hb_000347_120 Hb_004440_040--Hb_000347_120 Hb_002263_040 Hb_002263_040 Hb_004440_040--Hb_002263_040 Hb_002636_100 Hb_002636_100 Hb_004440_040--Hb_002636_100 Hb_003055_060 Hb_003055_060 Hb_004440_040--Hb_003055_060 Hb_001766_020 Hb_001766_020 Hb_004440_040--Hb_001766_020 Hb_011930_110--Hb_002263_040 Hb_001754_030 Hb_001754_030 Hb_011930_110--Hb_001754_030 Hb_001728_050 Hb_001728_050 Hb_011930_110--Hb_001728_050 Hb_000103_100 Hb_000103_100 Hb_011930_110--Hb_000103_100 Hb_000803_070 Hb_000803_070 Hb_011930_110--Hb_000803_070 Hb_000373_100 Hb_000373_100 Hb_000347_120--Hb_000373_100 Hb_005389_160 Hb_005389_160 Hb_000347_120--Hb_005389_160 Hb_010417_070 Hb_010417_070 Hb_000347_120--Hb_010417_070 Hb_000094_320 Hb_000094_320 Hb_000347_120--Hb_000094_320 Hb_004410_070 Hb_004410_070 Hb_000347_120--Hb_004410_070 Hb_000442_010 Hb_000442_010 Hb_002263_040--Hb_000442_010 Hb_002798_070 Hb_002798_070 Hb_002263_040--Hb_002798_070 Hb_002263_040--Hb_002636_100 Hb_002783_040 Hb_002783_040 Hb_002263_040--Hb_002783_040 Hb_000061_030 Hb_000061_030 Hb_002263_040--Hb_000061_030 Hb_000977_120 Hb_000977_120 Hb_002263_040--Hb_000977_120 Hb_008775_040 Hb_008775_040 Hb_002636_100--Hb_008775_040 Hb_000264_320 Hb_000264_320 Hb_002636_100--Hb_000264_320 Hb_002636_100--Hb_002798_070 Hb_000322_150 Hb_000322_150 Hb_002636_100--Hb_000322_150 Hb_000796_180 Hb_000796_180 Hb_002636_100--Hb_000796_180 Hb_012055_060 Hb_012055_060 Hb_003055_060--Hb_012055_060 Hb_009767_100 Hb_009767_100 Hb_003055_060--Hb_009767_100 Hb_005288_010 Hb_005288_010 Hb_003055_060--Hb_005288_010 Hb_000243_250 Hb_000243_250 Hb_003055_060--Hb_000243_250 Hb_011491_010 Hb_011491_010 Hb_003055_060--Hb_011491_010 Hb_001005_190 Hb_001005_190 Hb_003055_060--Hb_001005_190 Hb_001104_170 Hb_001104_170 Hb_001766_020--Hb_001104_170 Hb_001766_020--Hb_000442_010 Hb_003728_040 Hb_003728_040 Hb_001766_020--Hb_003728_040 Hb_000905_210 Hb_000905_210 Hb_001766_020--Hb_000905_210 Hb_001766_020--Hb_005389_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.4897 35.2502 12.3975 6.59094 12.4698 11.7817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2654 10.5148 12.6656 8.90962 11.4509

CAGE analysis