Hb_004440_050

Information

Type -
Description -
Location Contig4440: 79809-84016
Sequence    

Annotation

kegg
ID cmo:103502676
description anaphase-promoting complex subunit 10
nr
ID XP_008464918.1
description PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
swissprot
ID Q9ZPW2
description Anaphase-promoting complex subunit 10 OS=Arabidopsis thaliana GN=APC10 PE=1 SV=2
trembl
ID A0A0A0LFJ9
description Anaphase-promoting complex subunit 10 OS=Cucumis sativus GN=Csa_3G839820 PE=3 SV=1
Gene Ontology
ID GO:0005680
description anaphase-promoting complex subunit 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42767: 80168-84024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004440_050 0.0 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
2 Hb_001369_660 0.0537847214 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
3 Hb_002411_170 0.05745372 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
4 Hb_009767_120 0.0718703599 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
5 Hb_001604_080 0.0761931431 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
6 Hb_003874_020 0.077090477 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
7 Hb_010180_020 0.0772006629 - - hypothetical protein glysoja_030394 [Glycine soja]
8 Hb_012008_020 0.077926262 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
9 Hb_003038_030 0.0821927278 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
10 Hb_125000_010 0.0822000301 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
11 Hb_000349_060 0.0843311752 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
12 Hb_000457_110 0.0851031126 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
13 Hb_004944_010 0.0856704524 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
14 Hb_011360_140 0.0857673517 - - 40S ribosomal protein S19, putative [Ricinus communis]
15 Hb_000019_230 0.0861323847 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
16 Hb_000340_300 0.0865162893 - - methyl-CpG-binding domain-containing family protein [Populus trichocarpa]
17 Hb_000157_030 0.0868240078 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
18 Hb_002374_160 0.0882404439 - - PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Jatropha curcas]
19 Hb_000163_160 0.0892089758 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
20 Hb_004128_190 0.0899729057 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]

Gene co-expression network

sample Hb_004440_050 Hb_004440_050 Hb_001369_660 Hb_001369_660 Hb_004440_050--Hb_001369_660 Hb_002411_170 Hb_002411_170 Hb_004440_050--Hb_002411_170 Hb_009767_120 Hb_009767_120 Hb_004440_050--Hb_009767_120 Hb_001604_080 Hb_001604_080 Hb_004440_050--Hb_001604_080 Hb_003874_020 Hb_003874_020 Hb_004440_050--Hb_003874_020 Hb_010180_020 Hb_010180_020 Hb_004440_050--Hb_010180_020 Hb_000163_160 Hb_000163_160 Hb_001369_660--Hb_000163_160 Hb_168054_010 Hb_168054_010 Hb_001369_660--Hb_168054_010 Hb_001369_660--Hb_010180_020 Hb_001369_660--Hb_001604_080 Hb_003687_110 Hb_003687_110 Hb_001369_660--Hb_003687_110 Hb_003038_030 Hb_003038_030 Hb_002411_170--Hb_003038_030 Hb_125000_010 Hb_125000_010 Hb_002411_170--Hb_125000_010 Hb_148912_010 Hb_148912_010 Hb_002411_170--Hb_148912_010 Hb_002411_170--Hb_010180_020 Hb_002411_170--Hb_001604_080 Hb_000933_180 Hb_000933_180 Hb_009767_120--Hb_000933_180 Hb_009767_120--Hb_003874_020 Hb_000690_080 Hb_000690_080 Hb_009767_120--Hb_000690_080 Hb_011360_140 Hb_011360_140 Hb_009767_120--Hb_011360_140 Hb_011828_050 Hb_011828_050 Hb_009767_120--Hb_011828_050 Hb_001369_650 Hb_001369_650 Hb_009767_120--Hb_001369_650 Hb_001604_080--Hb_010180_020 Hb_000815_040 Hb_000815_040 Hb_001604_080--Hb_000815_040 Hb_000103_560 Hb_000103_560 Hb_001604_080--Hb_000103_560 Hb_063716_050 Hb_063716_050 Hb_001604_080--Hb_063716_050 Hb_000926_250 Hb_000926_250 Hb_001604_080--Hb_000926_250 Hb_000529_190 Hb_000529_190 Hb_001604_080--Hb_000529_190 Hb_004724_100 Hb_004724_100 Hb_003874_020--Hb_004724_100 Hb_001279_070 Hb_001279_070 Hb_003874_020--Hb_001279_070 Hb_004944_010 Hb_004944_010 Hb_003874_020--Hb_004944_010 Hb_003874_020--Hb_000690_080 Hb_004545_060 Hb_004545_060 Hb_010180_020--Hb_004545_060 Hb_004306_020 Hb_004306_020 Hb_010180_020--Hb_004306_020 Hb_000024_080 Hb_000024_080 Hb_010180_020--Hb_000024_080 Hb_010180_020--Hb_000815_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5245 9.05157 9.66292 10.4155 21.1851 36.5123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.718 37.5508 14.775 8.37369 5.8462

CAGE analysis