Hb_004440_090

Information

Type -
Description -
Location Contig4440: 92384-95083
Sequence    

Annotation

kegg
ID rcu:RCOM_0535810
description syntaxin, putative
nr
ID XP_012079668.1
description PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
swissprot
ID Q9ZPV8
description Phosphopantetheine adenylyltransferase OS=Arabidopsis thaliana GN=COAD PE=1 SV=1
trembl
ID A0A067KHB5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14966 PE=4 SV=1
Gene Ontology
ID GO:0005829
description phosphopantetheine adenylyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42771: 92409-95322 , PASA_asmbl_42772: 92436-95104
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004440_090 0.0 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
2 Hb_003005_020 0.0585544946 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
3 Hb_002391_300 0.0611434535 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
4 Hb_063716_050 0.0614312628 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
5 Hb_000046_280 0.0626171001 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
6 Hb_000398_180 0.0648706406 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
7 Hb_007426_230 0.0653431423 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
8 Hb_002149_020 0.0659432725 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
9 Hb_000243_030 0.0660064579 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
10 Hb_002006_020 0.0695918557 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
11 Hb_148912_010 0.0698678513 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011689_080 0.0714546847 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
13 Hb_000300_060 0.0742025023 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
14 Hb_002081_130 0.0743704255 - - serine carboxypeptidase, putative [Ricinus communis]
15 Hb_000172_370 0.0745373148 - - -
16 Hb_000529_190 0.0748672018 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
17 Hb_000926_250 0.0748901315 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
18 Hb_125000_010 0.0753585262 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
19 Hb_005993_040 0.0758905832 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
20 Hb_001489_060 0.0767963772 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004440_090 Hb_004440_090 Hb_003005_020 Hb_003005_020 Hb_004440_090--Hb_003005_020 Hb_002391_300 Hb_002391_300 Hb_004440_090--Hb_002391_300 Hb_063716_050 Hb_063716_050 Hb_004440_090--Hb_063716_050 Hb_000046_280 Hb_000046_280 Hb_004440_090--Hb_000046_280 Hb_000398_180 Hb_000398_180 Hb_004440_090--Hb_000398_180 Hb_007426_230 Hb_007426_230 Hb_004440_090--Hb_007426_230 Hb_000172_370 Hb_000172_370 Hb_003005_020--Hb_000172_370 Hb_000384_090 Hb_000384_090 Hb_003005_020--Hb_000384_090 Hb_000608_030 Hb_000608_030 Hb_003005_020--Hb_000608_030 Hb_148912_010 Hb_148912_010 Hb_003005_020--Hb_148912_010 Hb_003005_020--Hb_000398_180 Hb_000373_240 Hb_000373_240 Hb_002391_300--Hb_000373_240 Hb_003406_010 Hb_003406_010 Hb_002391_300--Hb_003406_010 Hb_000926_280 Hb_000926_280 Hb_002391_300--Hb_000926_280 Hb_012092_010 Hb_012092_010 Hb_002391_300--Hb_012092_010 Hb_007218_080 Hb_007218_080 Hb_002391_300--Hb_007218_080 Hb_000103_560 Hb_000103_560 Hb_063716_050--Hb_000103_560 Hb_001489_060 Hb_001489_060 Hb_063716_050--Hb_001489_060 Hb_003050_080 Hb_003050_080 Hb_063716_050--Hb_003050_080 Hb_000529_190 Hb_000529_190 Hb_063716_050--Hb_000529_190 Hb_000832_140 Hb_000832_140 Hb_063716_050--Hb_000832_140 Hb_001604_080 Hb_001604_080 Hb_063716_050--Hb_001604_080 Hb_012725_050 Hb_012725_050 Hb_000046_280--Hb_012725_050 Hb_002214_040 Hb_002214_040 Hb_000046_280--Hb_002214_040 Hb_007576_040 Hb_007576_040 Hb_000046_280--Hb_007576_040 Hb_001703_030 Hb_001703_030 Hb_000046_280--Hb_001703_030 Hb_000392_440 Hb_000392_440 Hb_000046_280--Hb_000392_440 Hb_028872_140 Hb_028872_140 Hb_000398_180--Hb_028872_140 Hb_001377_290 Hb_001377_290 Hb_000398_180--Hb_001377_290 Hb_004195_160 Hb_004195_160 Hb_000398_180--Hb_004195_160 Hb_011689_080 Hb_011689_080 Hb_000398_180--Hb_011689_080 Hb_006332_020 Hb_006332_020 Hb_000398_180--Hb_006332_020 Hb_007380_070 Hb_007380_070 Hb_000398_180--Hb_007380_070 Hb_007426_230--Hb_004195_160 Hb_002097_110 Hb_002097_110 Hb_007426_230--Hb_002097_110 Hb_001030_120 Hb_001030_120 Hb_007426_230--Hb_001030_120 Hb_015001_020 Hb_015001_020 Hb_007426_230--Hb_015001_020 Hb_007426_230--Hb_000398_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2334 7.03046 9.29241 9.14627 27.9989 27.4499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.6214 27.8022 20.2501 11.3475 8.13632

CAGE analysis