Hb_004445_020

Information

Type -
Description -
Location Contig4445: 15490-17374
Sequence    

Annotation

kegg
ID vvi:100251420
description uncharacterized LOC100251420
nr
ID KDP32616.1
description hypothetical protein JCGZ_13166 [Jatropha curcas]
swissprot
ID Q02VU7
description Regulatory protein RecX OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=recX PE=3 SV=1
trembl
ID A0A067K8Q7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13166 PE=3 SV=1
Gene Ontology
ID GO:0006282
description regulatory protein recx

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42775: 17226-34870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004445_020 0.0 - - hypothetical protein JCGZ_13166 [Jatropha curcas]
2 Hb_005078_010 0.1562219599 - - Derlin-2, putative [Ricinus communis]
3 Hb_000084_200 0.1611475438 - - PREDICTED: uncharacterized protein LOC105634688 isoform X2 [Jatropha curcas]
4 Hb_138781_010 0.1649655506 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
5 Hb_003030_030 0.1653952772 - - -
6 Hb_032920_050 0.1771316371 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
7 Hb_026745_020 0.1799194912 - - PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic [Jatropha curcas]
8 Hb_000661_080 0.1817874815 - - monoxygenase, putative [Ricinus communis]
9 Hb_002496_020 0.1825076977 - - DNA binding protein, putative [Ricinus communis]
10 Hb_004724_460 0.1831386976 - - hypothetical protein EUGRSUZ_L02100 [Eucalyptus grandis]
11 Hb_004060_020 0.1838295923 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_004445_040 0.1861127231 - - PREDICTED: uncharacterized protein LOC105639134 isoform X5 [Jatropha curcas]
13 Hb_012506_060 0.1872502659 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
14 Hb_158845_050 0.1874970043 - - PREDICTED: uncharacterized protein LOC105122890 [Populus euphratica]
15 Hb_004333_050 0.1884701016 - - -
16 Hb_000479_250 0.1887096292 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
17 Hb_007101_080 0.1893245624 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
18 Hb_017987_030 0.1902724309 - - PREDICTED: uncharacterized protein LOC105630796 [Jatropha curcas]
19 Hb_006274_050 0.1913859002 - - hypothetical protein VITISV_022618 [Vitis vinifera]
20 Hb_000656_090 0.1922913609 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_004445_020 Hb_004445_020 Hb_005078_010 Hb_005078_010 Hb_004445_020--Hb_005078_010 Hb_000084_200 Hb_000084_200 Hb_004445_020--Hb_000084_200 Hb_138781_010 Hb_138781_010 Hb_004445_020--Hb_138781_010 Hb_003030_030 Hb_003030_030 Hb_004445_020--Hb_003030_030 Hb_032920_050 Hb_032920_050 Hb_004445_020--Hb_032920_050 Hb_026745_020 Hb_026745_020 Hb_004445_020--Hb_026745_020 Hb_012194_050 Hb_012194_050 Hb_005078_010--Hb_012194_050 Hb_152202_010 Hb_152202_010 Hb_005078_010--Hb_152202_010 Hb_004060_020 Hb_004060_020 Hb_005078_010--Hb_004060_020 Hb_004994_380 Hb_004994_380 Hb_005078_010--Hb_004994_380 Hb_000193_270 Hb_000193_270 Hb_005078_010--Hb_000193_270 Hb_000074_080 Hb_000074_080 Hb_005078_010--Hb_000074_080 Hb_005015_060 Hb_005015_060 Hb_000084_200--Hb_005015_060 Hb_001014_110 Hb_001014_110 Hb_000084_200--Hb_001014_110 Hb_004724_460 Hb_004724_460 Hb_000084_200--Hb_004724_460 Hb_000608_380 Hb_000608_380 Hb_000084_200--Hb_000608_380 Hb_005701_060 Hb_005701_060 Hb_000084_200--Hb_005701_060 Hb_000599_200 Hb_000599_200 Hb_000084_200--Hb_000599_200 Hb_138781_010--Hb_032920_050 Hb_007994_010 Hb_007994_010 Hb_138781_010--Hb_007994_010 Hb_135572_010 Hb_135572_010 Hb_138781_010--Hb_135572_010 Hb_002897_090 Hb_002897_090 Hb_138781_010--Hb_002897_090 Hb_000731_010 Hb_000731_010 Hb_138781_010--Hb_000731_010 Hb_009252_040 Hb_009252_040 Hb_138781_010--Hb_009252_040 Hb_000656_090 Hb_000656_090 Hb_003030_030--Hb_000656_090 Hb_003141_070 Hb_003141_070 Hb_003030_030--Hb_003141_070 Hb_000105_120 Hb_000105_120 Hb_003030_030--Hb_000105_120 Hb_015978_110 Hb_015978_110 Hb_003030_030--Hb_015978_110 Hb_003606_060 Hb_003606_060 Hb_003030_030--Hb_003606_060 Hb_036790_080 Hb_036790_080 Hb_032920_050--Hb_036790_080 Hb_000130_320 Hb_000130_320 Hb_032920_050--Hb_000130_320 Hb_000613_110 Hb_000613_110 Hb_032920_050--Hb_000613_110 Hb_000479_250 Hb_000479_250 Hb_032920_050--Hb_000479_250 Hb_003994_110 Hb_003994_110 Hb_032920_050--Hb_003994_110 Hb_007101_080 Hb_007101_080 Hb_032920_050--Hb_007101_080 Hb_026745_020--Hb_005701_060 Hb_004060_030 Hb_004060_030 Hb_026745_020--Hb_004060_030 Hb_004303_040 Hb_004303_040 Hb_026745_020--Hb_004303_040 Hb_026745_020--Hb_000193_270 Hb_162603_010 Hb_162603_010 Hb_026745_020--Hb_162603_010 Hb_025194_100 Hb_025194_100 Hb_026745_020--Hb_025194_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.04449 0.47822 2.08418 3.68728 1.02846 7.13754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.3365 3.41934 1.85124 3.19863 8.63036

CAGE analysis