Hb_004445_040

Information

Type -
Description -
Location Contig4445: 34684-37072
Sequence    

Annotation

kegg
ID mdm:103407624
description uncharacterized LOC103407624
nr
ID XP_012078483.1
description PREDICTED: uncharacterized protein LOC105639134 isoform X5 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0D2V2H2
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G452100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42775: 17226-34870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004445_040 0.0 - - PREDICTED: uncharacterized protein LOC105639134 isoform X5 [Jatropha curcas]
2 Hb_005608_030 0.1423598926 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
3 Hb_005078_010 0.1460880354 - - Derlin-2, putative [Ricinus communis]
4 Hb_002174_050 0.150229849 - - -
5 Hb_004060_030 0.1513720787 - - PREDICTED: primase homolog protein [Jatropha curcas]
6 Hb_013691_020 0.1591442034 - - transcription initiation factor iie, alpha subunit, putative [Ricinus communis]
7 Hb_010565_010 0.1606747725 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
8 Hb_013358_080 0.1624021084 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
9 Hb_004117_160 0.1630926077 transcription factor TF Family: B3 B3 domain-containing transcription repressor VAL2 -like protein [Gossypium arboreum]
10 Hb_000100_160 0.1645481649 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
11 Hb_054745_010 0.165020709 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007026_040 0.1680726196 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
13 Hb_169631_010 0.1707470008 - - MADS-box transcription factor, putative [Ricinus communis]
14 Hb_005527_020 0.1713504555 - - PREDICTED: uncharacterized protein LOC105643027 [Jatropha curcas]
15 Hb_012194_050 0.1720857683 - - Aspartyl aminopeptidase, putative [Ricinus communis]
16 Hb_000679_150 0.1722932086 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
17 Hb_005023_030 0.1732428066 - - PREDICTED: uncharacterized protein LOC103417254 [Malus domestica]
18 Hb_011918_040 0.1734563339 - - PREDICTED: dnaJ protein homolog 2 [Jatropha curcas]
19 Hb_002400_330 0.173506361 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
20 Hb_001386_140 0.1737429636 - - PREDICTED: B2 protein [Jatropha curcas]

Gene co-expression network

sample Hb_004445_040 Hb_004445_040 Hb_005608_030 Hb_005608_030 Hb_004445_040--Hb_005608_030 Hb_005078_010 Hb_005078_010 Hb_004445_040--Hb_005078_010 Hb_002174_050 Hb_002174_050 Hb_004445_040--Hb_002174_050 Hb_004060_030 Hb_004060_030 Hb_004445_040--Hb_004060_030 Hb_013691_020 Hb_013691_020 Hb_004445_040--Hb_013691_020 Hb_010565_010 Hb_010565_010 Hb_004445_040--Hb_010565_010 Hb_032458_010 Hb_032458_010 Hb_005608_030--Hb_032458_010 Hb_000679_150 Hb_000679_150 Hb_005608_030--Hb_000679_150 Hb_004619_050 Hb_004619_050 Hb_005608_030--Hb_004619_050 Hb_000364_080 Hb_000364_080 Hb_005608_030--Hb_000364_080 Hb_020000_020 Hb_020000_020 Hb_005608_030--Hb_020000_020 Hb_006663_070 Hb_006663_070 Hb_005608_030--Hb_006663_070 Hb_012194_050 Hb_012194_050 Hb_005078_010--Hb_012194_050 Hb_152202_010 Hb_152202_010 Hb_005078_010--Hb_152202_010 Hb_004060_020 Hb_004060_020 Hb_005078_010--Hb_004060_020 Hb_004994_380 Hb_004994_380 Hb_005078_010--Hb_004994_380 Hb_000193_270 Hb_000193_270 Hb_005078_010--Hb_000193_270 Hb_000074_080 Hb_000074_080 Hb_005078_010--Hb_000074_080 Hb_001633_020 Hb_001633_020 Hb_002174_050--Hb_001633_020 Hb_002174_050--Hb_004060_030 Hb_002374_020 Hb_002374_020 Hb_002174_050--Hb_002374_020 Hb_001124_080 Hb_001124_080 Hb_002174_050--Hb_001124_080 Hb_005527_020 Hb_005527_020 Hb_002174_050--Hb_005527_020 Hb_026745_020 Hb_026745_020 Hb_004060_030--Hb_026745_020 Hb_005085_030 Hb_005085_030 Hb_004060_030--Hb_005085_030 Hb_028420_020 Hb_028420_020 Hb_004060_030--Hb_028420_020 Hb_005862_010 Hb_005862_010 Hb_004060_030--Hb_005862_010 Hb_000329_560 Hb_000329_560 Hb_004060_030--Hb_000329_560 Hb_002737_070 Hb_002737_070 Hb_013691_020--Hb_002737_070 Hb_000062_430 Hb_000062_430 Hb_013691_020--Hb_000062_430 Hb_013691_020--Hb_000364_080 Hb_002007_180 Hb_002007_180 Hb_013691_020--Hb_002007_180 Hb_000198_070 Hb_000198_070 Hb_013691_020--Hb_000198_070 Hb_013691_020--Hb_005608_030 Hb_002067_120 Hb_002067_120 Hb_010565_010--Hb_002067_120 Hb_001386_140 Hb_001386_140 Hb_010565_010--Hb_001386_140 Hb_000606_080 Hb_000606_080 Hb_010565_010--Hb_000606_080 Hb_005023_030 Hb_005023_030 Hb_010565_010--Hb_005023_030 Hb_004934_070 Hb_004934_070 Hb_010565_010--Hb_004934_070 Hb_005714_130 Hb_005714_130 Hb_010565_010--Hb_005714_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.25049 1.58655 2.55871 6.72355 1.48354 12.555
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.66087 2.87504 2.41455 3.04899 4.67162

CAGE analysis