Hb_004447_020

Information

Type -
Description -
Location Contig4447: 41199-43178
Sequence    

Annotation

kegg
ID rcu:RCOM_0373010
description carbohydrate binding protein, putative (EC:2.7.11.22)
nr
ID XP_002534540.1
description carbohydrate binding protein, putative [Ricinus communis]
swissprot
ID Q9SZD5
description L-type lectin-domain containing receptor kinase V.9 OS=Arabidopsis thaliana GN=LECRK59 PE=2 SV=1
trembl
ID B9T8H1
description Carbohydrate binding protein, putative (Fragment) OS=Ricinus communis GN=RCOM_0373010 PE=3 SV=1
Gene Ontology
ID GO:0004672
description concanavalin a-like lectin protein kinase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004447_020 0.0 - - carbohydrate binding protein, putative [Ricinus communis]
2 Hb_003807_020 0.0801603383 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
3 Hb_000335_050 0.0907795033 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
4 Hb_003376_200 0.0976388463 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
5 Hb_002805_150 0.1015913371 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_000579_180 0.1020579246 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
7 Hb_012753_200 0.1045838883 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
8 Hb_006711_020 0.1063248979 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
9 Hb_001221_480 0.1083603203 - - metal ion binding protein, putative [Ricinus communis]
10 Hb_002391_350 0.1180019311 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
11 Hb_001514_210 0.1189811876 - - hypothetical protein VITISV_012133 [Vitis vinifera]
12 Hb_000085_230 0.1200765677 - - PREDICTED: probable long-chain-alcohol O-fatty-acyltransferase 5 [Jatropha curcas]
13 Hb_001421_010 0.1205744598 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
14 Hb_010926_010 0.1213045507 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
15 Hb_000836_390 0.123454873 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
16 Hb_000407_080 0.1251741264 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
17 Hb_000009_130 0.1281755342 - - hypothetical protein POPTR_0007s12410g [Populus trichocarpa]
18 Hb_003788_010 0.1294473676 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
19 Hb_010519_020 0.1332171317 - - hypothetical protein JCGZ_19028 [Jatropha curcas]
20 Hb_001355_110 0.1333490507 - - PREDICTED: mitochondrial chaperone BCS1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004447_020 Hb_004447_020 Hb_003807_020 Hb_003807_020 Hb_004447_020--Hb_003807_020 Hb_000335_050 Hb_000335_050 Hb_004447_020--Hb_000335_050 Hb_003376_200 Hb_003376_200 Hb_004447_020--Hb_003376_200 Hb_002805_150 Hb_002805_150 Hb_004447_020--Hb_002805_150 Hb_000579_180 Hb_000579_180 Hb_004447_020--Hb_000579_180 Hb_012753_200 Hb_012753_200 Hb_004447_020--Hb_012753_200 Hb_003807_020--Hb_000335_050 Hb_003807_020--Hb_000579_180 Hb_002007_140 Hb_002007_140 Hb_003807_020--Hb_002007_140 Hb_009581_050 Hb_009581_050 Hb_003807_020--Hb_009581_050 Hb_002391_350 Hb_002391_350 Hb_003807_020--Hb_002391_350 Hb_010926_010 Hb_010926_010 Hb_000335_050--Hb_010926_010 Hb_000335_050--Hb_009581_050 Hb_000335_050--Hb_002391_350 Hb_000335_050--Hb_000579_180 Hb_134017_010 Hb_134017_010 Hb_003376_200--Hb_134017_010 Hb_074312_020 Hb_074312_020 Hb_003376_200--Hb_074312_020 Hb_001862_060 Hb_001862_060 Hb_003376_200--Hb_001862_060 Hb_000407_080 Hb_000407_080 Hb_003376_200--Hb_000407_080 Hb_008406_020 Hb_008406_020 Hb_003376_200--Hb_008406_020 Hb_002805_150--Hb_012753_200 Hb_012395_070 Hb_012395_070 Hb_002805_150--Hb_012395_070 Hb_002805_150--Hb_003807_020 Hb_003031_030 Hb_003031_030 Hb_002805_150--Hb_003031_030 Hb_002805_150--Hb_000579_180 Hb_001514_210 Hb_001514_210 Hb_002805_150--Hb_001514_210 Hb_000579_180--Hb_012753_200 Hb_000085_230 Hb_000085_230 Hb_000579_180--Hb_000085_230 Hb_000579_180--Hb_010926_010 Hb_012807_060 Hb_012807_060 Hb_000579_180--Hb_012807_060 Hb_001894_040 Hb_001894_040 Hb_000579_180--Hb_001894_040 Hb_012753_200--Hb_003807_020 Hb_012753_200--Hb_002007_140 Hb_012753_200--Hb_012395_070 Hb_012753_200--Hb_001514_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0249058 0.70336 0.246495 0.34466 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.07169 0.113812

CAGE analysis