Hb_004447_030

Information

Type -
Description -
Location Contig4447: 46658-49107
Sequence    

Annotation

kegg
ID cam:101512240
description glucose-induced degradation protein 4 homolog
nr
ID XP_012074980.1
description PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
swissprot
ID Q9CPY6
description Glucose-induced degradation protein 4 homolog OS=Mus musculus GN=Gid4 PE=2 SV=1
trembl
ID A0A067KV08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09107 PE=4 SV=1
Gene Ontology
ID GO:0006661
description glucose-induced degradation protein 4 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42784: 46711-49250
cDNA
(Sanger)
(ID:Location)		 009_F17.ab1: 46771-47417

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004447_030 0.0 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
2 Hb_000205_120 0.0729034485 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
3 Hb_001663_110 0.076652791 - - RNA binding protein, putative [Ricinus communis]
4 Hb_000976_270 0.0782599303 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
5 Hb_000347_080 0.0845028845 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
6 Hb_000265_150 0.0867715695 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
7 Hb_000529_080 0.0870227977 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
8 Hb_017259_010 0.0889274789 - - -
9 Hb_000290_020 0.0932585951 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
10 Hb_001956_120 0.0944561185 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007441_340 0.0969226786 - - protein with unknown function [Ricinus communis]
12 Hb_001504_150 0.0974454585 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
13 Hb_010968_010 0.097814764 - - Golgi snare 12 isoform 1 [Theobroma cacao]
14 Hb_175612_010 0.0984671979 transcription factor TF Family: MBF1 orf [Ricinus communis]
15 Hb_000482_110 0.098953426 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
16 Hb_000116_110 0.0991038339 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
17 Hb_001951_260 0.0992460797 - - 60S ribosomal protein L32, putative [Ricinus communis]
18 Hb_025236_040 0.1003998194 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000617_220 0.1015820579 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
20 Hb_001741_140 0.104378419 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004447_030 Hb_004447_030 Hb_000205_120 Hb_000205_120 Hb_004447_030--Hb_000205_120 Hb_001663_110 Hb_001663_110 Hb_004447_030--Hb_001663_110 Hb_000976_270 Hb_000976_270 Hb_004447_030--Hb_000976_270 Hb_000347_080 Hb_000347_080 Hb_004447_030--Hb_000347_080 Hb_000265_150 Hb_000265_150 Hb_004447_030--Hb_000265_150 Hb_000529_080 Hb_000529_080 Hb_004447_030--Hb_000529_080 Hb_000205_120--Hb_000529_080 Hb_000205_120--Hb_000265_150 Hb_008887_050 Hb_008887_050 Hb_000205_120--Hb_008887_050 Hb_000205_120--Hb_000976_270 Hb_010968_010 Hb_010968_010 Hb_000205_120--Hb_010968_010 Hb_001663_110--Hb_000976_270 Hb_001663_110--Hb_000205_120 Hb_000236_280 Hb_000236_280 Hb_001663_110--Hb_000236_280 Hb_012305_070 Hb_012305_070 Hb_001663_110--Hb_012305_070 Hb_005237_060 Hb_005237_060 Hb_001663_110--Hb_005237_060 Hb_000209_090 Hb_000209_090 Hb_000976_270--Hb_000209_090 Hb_004525_100 Hb_004525_100 Hb_000976_270--Hb_004525_100 Hb_001956_120 Hb_001956_120 Hb_000976_270--Hb_001956_120 Hb_000347_080--Hb_001956_120 Hb_012977_010 Hb_012977_010 Hb_000347_080--Hb_012977_010 Hb_000347_080--Hb_000205_120 Hb_000347_080--Hb_000976_270 Hb_004449_220 Hb_004449_220 Hb_000347_080--Hb_004449_220 Hb_000265_150--Hb_012305_070 Hb_004722_060 Hb_004722_060 Hb_000265_150--Hb_004722_060 Hb_000265_150--Hb_000529_080 Hb_000768_050 Hb_000768_050 Hb_000265_150--Hb_000768_050 Hb_008406_160 Hb_008406_160 Hb_000265_150--Hb_008406_160 Hb_000058_040 Hb_000058_040 Hb_000529_080--Hb_000058_040 Hb_000529_080--Hb_008887_050 Hb_000529_080--Hb_000976_270 Hb_031939_010 Hb_031939_010 Hb_000529_080--Hb_031939_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
97.9794 22.9241 29.6362 26.7986 87.1319 88.7935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.1995 52.6309 23.3485 13.5006 6.43117

CAGE analysis