Hb_004447_050

Information

Type -
Description -
Location Contig4447: 56558-57300
Sequence    

Annotation

kegg
ID rcu:RCOM_0451730
description OHP, putative
nr
ID XP_012074977.1
description PREDICTED: high-light-induced protein, chloroplastic [Jatropha curcas]
swissprot
ID O81208
description High-light-induced protein, chloroplastic OS=Arabidopsis thaliana GN=HLIP PE=1 SV=1
trembl
ID A0A067KHR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09105 PE=4 SV=1
Gene Ontology
ID GO:0009637
description high-light-induced chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42786: 56575-57428
cDNA
(Sanger)
(ID:Location)		 015_A07.ab1: 56589-57351 , 016_K06.ab1: 56589-57428 , 017_O09.ab1: 56592-57370

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004447_050 0.0 - - PREDICTED: high-light-induced protein, chloroplastic [Jatropha curcas]
2 Hb_000032_360 0.1137273326 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Jatropha curcas]
3 Hb_010683_030 0.1215319936 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001141_350 0.1351759703 - - hypothetical protein JCGZ_02174 [Jatropha curcas]
5 Hb_007479_010 0.1441242203 - - Root phototropism protein, putative [Ricinus communis]
6 Hb_004855_070 0.1441637243 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
7 Hb_000130_130 0.1522019818 - - hypothetical protein POPTR_0001s40330g [Populus trichocarpa]
8 Hb_018133_070 0.1530535952 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
9 Hb_000352_010 0.1532372111 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
10 Hb_000134_040 0.1535618061 - - PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]
11 Hb_003581_230 0.153651644 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
12 Hb_126933_020 0.1553059019 - - PREDICTED: uncharacterized protein LOC105638525 [Jatropha curcas]
13 Hb_010863_030 0.1592614624 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
14 Hb_004705_070 0.1603792278 - - PREDICTED: uncharacterized protein LOC105647312 isoform X1 [Jatropha curcas]
15 Hb_001343_120 0.1616460297 - - conserved hypothetical protein [Ricinus communis]
16 Hb_173660_010 0.1631390707 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Malus domestica]
17 Hb_002999_030 0.1668391609 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
18 Hb_004208_090 0.1672326507 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
19 Hb_000768_120 0.1673333711 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
20 Hb_000227_400 0.1675456559 - - lipoxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004447_050 Hb_004447_050 Hb_000032_360 Hb_000032_360 Hb_004447_050--Hb_000032_360 Hb_010683_030 Hb_010683_030 Hb_004447_050--Hb_010683_030 Hb_001141_350 Hb_001141_350 Hb_004447_050--Hb_001141_350 Hb_007479_010 Hb_007479_010 Hb_004447_050--Hb_007479_010 Hb_004855_070 Hb_004855_070 Hb_004447_050--Hb_004855_070 Hb_000130_130 Hb_000130_130 Hb_004447_050--Hb_000130_130 Hb_000032_360--Hb_000130_130 Hb_003581_230 Hb_003581_230 Hb_000032_360--Hb_003581_230 Hb_000032_360--Hb_001141_350 Hb_018133_070 Hb_018133_070 Hb_000032_360--Hb_018133_070 Hb_001221_060 Hb_001221_060 Hb_000032_360--Hb_001221_060 Hb_010863_030 Hb_010863_030 Hb_010683_030--Hb_010863_030 Hb_010683_030--Hb_018133_070 Hb_010683_030--Hb_000032_360 Hb_005000_010 Hb_005000_010 Hb_010683_030--Hb_005000_010 Hb_004705_070 Hb_004705_070 Hb_010683_030--Hb_004705_070 Hb_000836_090 Hb_000836_090 Hb_001141_350--Hb_000836_090 Hb_000062_130 Hb_000062_130 Hb_001141_350--Hb_000062_130 Hb_001936_190 Hb_001936_190 Hb_001141_350--Hb_001936_190 Hb_000645_260 Hb_000645_260 Hb_001141_350--Hb_000645_260 Hb_000181_330 Hb_000181_330 Hb_001141_350--Hb_000181_330 Hb_000465_020 Hb_000465_020 Hb_001141_350--Hb_000465_020 Hb_000768_120 Hb_000768_120 Hb_007479_010--Hb_000768_120 Hb_002495_090 Hb_002495_090 Hb_007479_010--Hb_002495_090 Hb_000134_040 Hb_000134_040 Hb_007479_010--Hb_000134_040 Hb_007479_010--Hb_004855_070 Hb_006681_020 Hb_006681_020 Hb_007479_010--Hb_006681_020 Hb_000932_110 Hb_000932_110 Hb_007479_010--Hb_000932_110 Hb_004855_070--Hb_006681_020 Hb_004855_070--Hb_000768_120 Hb_004208_090 Hb_004208_090 Hb_004855_070--Hb_004208_090 Hb_006583_030 Hb_006583_030 Hb_004855_070--Hb_006583_030 Hb_001999_260 Hb_001999_260 Hb_004855_070--Hb_001999_260 Hb_004855_070--Hb_000134_040 Hb_008511_040 Hb_008511_040 Hb_000130_130--Hb_008511_040 Hb_000322_030 Hb_000322_030 Hb_000130_130--Hb_000322_030 Hb_006133_020 Hb_006133_020 Hb_000130_130--Hb_006133_020 Hb_000130_130--Hb_018133_070 Hb_000984_150 Hb_000984_150 Hb_000130_130--Hb_000984_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.33969 25.3623 162.307 68.9556 10.4276 15.1017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.85876 0.918804 0.173643 3.55855 88.3651

CAGE analysis