Hb_004448_020

Information

Type -
Description -
Location Contig4448: 18470-21866
Sequence    

Annotation

kegg
ID pop:POPTR_0011s07740g
description POPTRDRAFT_822960; hypothetical protein
nr
ID XP_012091725.1
description PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9SF32
description Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
trembl
ID A0A067JB72
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21527 PE=4 SV=1
Gene Ontology
ID GO:0006807
description protein iq-domain 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42793: 19188-20644 , PASA_asmbl_42794: 20645-21118 , PASA_asmbl_42796: 20767-22040
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004448_020 0.0 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
2 Hb_000491_090 0.1137422883 - - hypothetical protein B456_008G219400 [Gossypium raimondii]
3 Hb_011671_220 0.1197776157 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000963_190 0.119831694 - - Glutamine amidotransferase subunit pdxT, putative [Ricinus communis]
5 Hb_015057_010 0.1342983741 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
6 Hb_005656_050 0.1352336341 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
7 Hb_009558_020 0.1359107856 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
8 Hb_000380_010 0.1401088821 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
9 Hb_092100_020 0.1408754857 - - strictosidine synthase, putative [Ricinus communis]
10 Hb_022092_090 0.141962196 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
11 Hb_006788_070 0.1442919869 - - 2-methyl-6-geranylgeranylbenzoquinone methyltranferase [Hevea brasiliensis]
12 Hb_006602_010 0.1451399018 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
13 Hb_001842_070 0.1464817247 - - PREDICTED: uncharacterized protein LOC105637106 [Jatropha curcas]
14 Hb_001221_510 0.146580184 - - Protein HVA22, putative [Ricinus communis]
15 Hb_001369_050 0.1469838087 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
16 Hb_000048_050 0.1469907584 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
17 Hb_000914_070 0.1470802869 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
18 Hb_001173_040 0.1472530567 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
19 Hb_023226_090 0.1506012115 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
20 Hb_000144_090 0.1506164145 transcription factor TF Family: GNAT Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004448_020 Hb_004448_020 Hb_000491_090 Hb_000491_090 Hb_004448_020--Hb_000491_090 Hb_011671_220 Hb_011671_220 Hb_004448_020--Hb_011671_220 Hb_000963_190 Hb_000963_190 Hb_004448_020--Hb_000963_190 Hb_015057_010 Hb_015057_010 Hb_004448_020--Hb_015057_010 Hb_005656_050 Hb_005656_050 Hb_004448_020--Hb_005656_050 Hb_009558_020 Hb_009558_020 Hb_004448_020--Hb_009558_020 Hb_000491_090--Hb_015057_010 Hb_000380_010 Hb_000380_010 Hb_000491_090--Hb_000380_010 Hb_001221_510 Hb_001221_510 Hb_000491_090--Hb_001221_510 Hb_001173_040 Hb_001173_040 Hb_000491_090--Hb_001173_040 Hb_100777_010 Hb_100777_010 Hb_000491_090--Hb_100777_010 Hb_005117_010 Hb_005117_010 Hb_011671_220--Hb_005117_010 Hb_020000_010 Hb_020000_010 Hb_011671_220--Hb_020000_010 Hb_000230_540 Hb_000230_540 Hb_011671_220--Hb_000230_540 Hb_004055_140 Hb_004055_140 Hb_011671_220--Hb_004055_140 Hb_010436_060 Hb_010436_060 Hb_011671_220--Hb_010436_060 Hb_002551_020 Hb_002551_020 Hb_011671_220--Hb_002551_020 Hb_007101_100 Hb_007101_100 Hb_000963_190--Hb_007101_100 Hb_000676_290 Hb_000676_290 Hb_000963_190--Hb_000676_290 Hb_001235_070 Hb_001235_070 Hb_000963_190--Hb_001235_070 Hb_007193_100 Hb_007193_100 Hb_000963_190--Hb_007193_100 Hb_001454_140 Hb_001454_140 Hb_000963_190--Hb_001454_140 Hb_071130_030 Hb_071130_030 Hb_000963_190--Hb_071130_030 Hb_004453_150 Hb_004453_150 Hb_015057_010--Hb_004453_150 Hb_015057_010--Hb_000963_190 Hb_015057_010--Hb_001454_140 Hb_015057_010--Hb_001235_070 Hb_015057_010--Hb_000380_010 Hb_015057_010--Hb_009558_020 Hb_005656_050--Hb_000380_010 Hb_007012_020 Hb_007012_020 Hb_005656_050--Hb_007012_020 Hb_007317_060 Hb_007317_060 Hb_005656_050--Hb_007317_060 Hb_022092_090 Hb_022092_090 Hb_005656_050--Hb_022092_090 Hb_005656_050--Hb_005117_010 Hb_005656_050--Hb_000963_190 Hb_000175_070 Hb_000175_070 Hb_009558_020--Hb_000175_070 Hb_006788_070 Hb_006788_070 Hb_009558_020--Hb_006788_070 Hb_000671_100 Hb_000671_100 Hb_009558_020--Hb_000671_100 Hb_010261_020 Hb_010261_020 Hb_009558_020--Hb_010261_020 Hb_000365_360 Hb_000365_360 Hb_009558_020--Hb_000365_360 Hb_009558_020--Hb_007193_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.1631 1.46002 2.31779 7.04073 22.6216 62.5927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.1655 29.3728 40.1748 6.99409 14.6724

CAGE analysis