Hb_004448_060

Information

Type -
Description -
Location Contig4448: 44926-47055
Sequence    

Annotation

kegg
ID rcu:RCOM_1013140
description hypothetical protein
nr
ID XP_002522530.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S961
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1013140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004448_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004734_050 0.2217845223 - - -
3 Hb_000258_450 0.2224219382 - - -
4 Hb_006342_020 0.236739229 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_000608_460 0.2430778145 - - -
6 Hb_000915_030 0.2491006339 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
7 Hb_007904_170 0.2610440882 - - PREDICTED: anther-specific protein BCP1 [Jatropha curcas]
8 Hb_181240_010 0.2692296807 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
9 Hb_004324_080 0.2733186363 - - -
10 Hb_000906_130 0.2747098747 - - -
11 Hb_006738_030 0.2802737092 - - Ras-related protein Rab7 [Morus notabilis]
12 Hb_003124_060 0.2873439123 - - Beta-ureidopropionase, putative [Ricinus communis]
13 Hb_000046_160 0.2875617402 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
14 Hb_003005_040 0.2908936038 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_005054_270 0.2912594457 - - -
16 Hb_005224_030 0.2913806083 - - Dipeptide transport ATP-binding protein dppF [Theobroma cacao]
17 Hb_014568_020 0.2984031166 - - PREDICTED: GPI mannosyltransferase 2 [Jatropha curcas]
18 Hb_004162_180 0.3004061811 - - zinc finger protein, putative [Ricinus communis]
19 Hb_001159_200 0.3004812508 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
20 Hb_000046_620 0.3011852589 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_004448_060 Hb_004448_060 Hb_004734_050 Hb_004734_050 Hb_004448_060--Hb_004734_050 Hb_000258_450 Hb_000258_450 Hb_004448_060--Hb_000258_450 Hb_006342_020 Hb_006342_020 Hb_004448_060--Hb_006342_020 Hb_000608_460 Hb_000608_460 Hb_004448_060--Hb_000608_460 Hb_000915_030 Hb_000915_030 Hb_004448_060--Hb_000915_030 Hb_007904_170 Hb_007904_170 Hb_004448_060--Hb_007904_170 Hb_181240_010 Hb_181240_010 Hb_004734_050--Hb_181240_010 Hb_003124_060 Hb_003124_060 Hb_004734_050--Hb_003124_060 Hb_004734_050--Hb_000915_030 Hb_042202_050 Hb_042202_050 Hb_004734_050--Hb_042202_050 Hb_011484_010 Hb_011484_010 Hb_004734_050--Hb_011484_010 Hb_162033_010 Hb_162033_010 Hb_000258_450--Hb_162033_010 Hb_004218_210 Hb_004218_210 Hb_000258_450--Hb_004218_210 Hb_000906_130 Hb_000906_130 Hb_000258_450--Hb_000906_130 Hb_001863_420 Hb_001863_420 Hb_000258_450--Hb_001863_420 Hb_000258_450--Hb_003124_060 Hb_005054_270 Hb_005054_270 Hb_006342_020--Hb_005054_270 Hb_115940_010 Hb_115940_010 Hb_006342_020--Hb_115940_010 Hb_000084_320 Hb_000084_320 Hb_006342_020--Hb_000084_320 Hb_001159_200 Hb_001159_200 Hb_006342_020--Hb_001159_200 Hb_000592_060 Hb_000592_060 Hb_006342_020--Hb_000592_060 Hb_003376_290 Hb_003376_290 Hb_006342_020--Hb_003376_290 Hb_014568_020 Hb_014568_020 Hb_000608_460--Hb_014568_020 Hb_002888_010 Hb_002888_010 Hb_000608_460--Hb_002888_010 Hb_000608_460--Hb_000915_030 Hb_004324_080 Hb_004324_080 Hb_000608_460--Hb_004324_080 Hb_000608_460--Hb_181240_010 Hb_000915_030--Hb_014568_020 Hb_000915_030--Hb_181240_010 Hb_000363_150 Hb_000363_150 Hb_000915_030--Hb_000363_150 Hb_000572_040 Hb_000572_040 Hb_007904_170--Hb_000572_040 Hb_002150_050 Hb_002150_050 Hb_007904_170--Hb_002150_050 Hb_000046_620 Hb_000046_620 Hb_007904_170--Hb_000046_620 Hb_004162_180 Hb_004162_180 Hb_007904_170--Hb_004162_180 Hb_000045_210 Hb_000045_210 Hb_007904_170--Hb_000045_210 Hb_141194_010 Hb_141194_010 Hb_007904_170--Hb_141194_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0178157 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0813843 0.256072 0.119076 0.0384692 0.13247

CAGE analysis