Hb_004448_090

Information

Type -
Description -
Location Contig4448: 89196-91769
Sequence    

Annotation

kegg
ID rcu:RCOM_0342850
description glucosidase II beta subunit, putative
nr
ID XP_012091718.1
description PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
swissprot
ID Q9FM96
description Glucosidase 2 subunit beta OS=Arabidopsis thaliana GN=PSL4 PE=2 SV=1
trembl
ID A0A067JNG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21520 PE=4 SV=1
Gene Ontology
ID GO:0005783
description glucosidase 2 subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004448_090 0.0 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
2 Hb_008447_040 0.1100237478 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
3 Hb_127552_060 0.1127528387 transcription factor TF Family: SWI/SNF-BAF60b protein binding protein, putative [Ricinus communis]
4 Hb_028912_040 0.1537701905 - - hypothetical protein POPTR_0016s03250g [Populus trichocarpa]
5 Hb_000071_180 0.1578972522 - - PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29 isoform X1 [Jatropha curcas]
6 Hb_000038_080 0.1619187169 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
7 Hb_002419_030 0.1627891771 - - -
8 Hb_002600_140 0.1633296706 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
9 Hb_012627_020 0.1642401147 - - PHYTOCHROME AND FLOWERING TIME 1 family protein [Populus trichocarpa]
10 Hb_000236_310 0.1702559737 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
11 Hb_001010_070 0.1704520845 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
12 Hb_007805_010 0.172751052 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
13 Hb_000656_090 0.172871122 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
14 Hb_000470_080 0.1733078853 - - Caldesmon, putative [Ricinus communis]
15 Hb_012180_030 0.1741486961 - - unnamed protein product [Vitis vinifera]
16 Hb_149225_010 0.1746711164 - - DNA-directed RNA polymerase II subunit rpb4, putative isoform 4, partial [Theobroma cacao]
17 Hb_008447_030 0.1767499114 - - -
18 Hb_000100_160 0.1789533375 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
19 Hb_004333_050 0.1790217073 - - -
20 Hb_006663_070 0.1793664024 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]

Gene co-expression network

sample Hb_004448_090 Hb_004448_090 Hb_008447_040 Hb_008447_040 Hb_004448_090--Hb_008447_040 Hb_127552_060 Hb_127552_060 Hb_004448_090--Hb_127552_060 Hb_028912_040 Hb_028912_040 Hb_004448_090--Hb_028912_040 Hb_000071_180 Hb_000071_180 Hb_004448_090--Hb_000071_180 Hb_000038_080 Hb_000038_080 Hb_004448_090--Hb_000038_080 Hb_002419_030 Hb_002419_030 Hb_004448_090--Hb_002419_030 Hb_008447_040--Hb_127552_060 Hb_007023_030 Hb_007023_030 Hb_008447_040--Hb_007023_030 Hb_000429_150 Hb_000429_150 Hb_008447_040--Hb_000429_150 Hb_000236_310 Hb_000236_310 Hb_008447_040--Hb_000236_310 Hb_002414_060 Hb_002414_060 Hb_008447_040--Hb_002414_060 Hb_127552_060--Hb_028912_040 Hb_187953_010 Hb_187953_010 Hb_127552_060--Hb_187953_010 Hb_127552_060--Hb_000236_310 Hb_000159_100 Hb_000159_100 Hb_127552_060--Hb_000159_100 Hb_002600_140 Hb_002600_140 Hb_028912_040--Hb_002600_140 Hb_004224_020 Hb_004224_020 Hb_028912_040--Hb_004224_020 Hb_028912_040--Hb_187953_010 Hb_007026_040 Hb_007026_040 Hb_028912_040--Hb_007026_040 Hb_000470_080 Hb_000470_080 Hb_028912_040--Hb_000470_080 Hb_011716_020 Hb_011716_020 Hb_000071_180--Hb_011716_020 Hb_000071_180--Hb_002600_140 Hb_002028_170 Hb_002028_170 Hb_000071_180--Hb_002028_170 Hb_011928_020 Hb_011928_020 Hb_000071_180--Hb_011928_020 Hb_006114_030 Hb_006114_030 Hb_000071_180--Hb_006114_030 Hb_000271_090 Hb_000271_090 Hb_000071_180--Hb_000271_090 Hb_000038_080--Hb_000236_310 Hb_005731_120 Hb_005731_120 Hb_000038_080--Hb_005731_120 Hb_000785_080 Hb_000785_080 Hb_000038_080--Hb_000785_080 Hb_004934_070 Hb_004934_070 Hb_000038_080--Hb_004934_070 Hb_000031_220 Hb_000031_220 Hb_000038_080--Hb_000031_220 Hb_099878_030 Hb_099878_030 Hb_000038_080--Hb_099878_030 Hb_001010_070 Hb_001010_070 Hb_002419_030--Hb_001010_070 Hb_009270_010 Hb_009270_010 Hb_002419_030--Hb_009270_010 Hb_000136_040 Hb_000136_040 Hb_002419_030--Hb_000136_040 Hb_002419_030--Hb_000470_080 Hb_003206_020 Hb_003206_020 Hb_002419_030--Hb_003206_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.99409 2.76998 2.71422 5.75784 4.92182 23.0866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.99912 2.79559 4.08034 12.7909 14.2937

CAGE analysis