Hb_004449_010

Information

Type -
Description -
Location Contig4449: 5590-16827
Sequence    

Annotation

kegg
ID rcu:RCOM_0994070
description triacylglycerol lipase, putative
nr
ID AAV66577.1
description lipase [Ricinus communis]
swissprot
ID P61872
description Lipase OS=Rhizopus oryzae PE=1 SV=1
trembl
ID Q5S8F1
description Lipase OS=Ricinus communis GN=OBL2 PE=2 SV=1
Gene Ontology
ID GO:0006629
description lipase class 3 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42803: 5581-6443 , PASA_asmbl_42804: 5921-6443 , PASA_asmbl_42806: 6531-8410 , PASA_asmbl_42807: 14571-15122 , PASA_asmbl_42808: 15771-16787
cDNA
(Sanger)
(ID:Location)		 007_M04.ab1: 5539-6317 , 020_G12.ab1: 5537-6398 , 024_J15.ab1: 5539-6313 , 026_L19.ab1: 5540-6286 , 033_F02.ab1: 5539-6374 , 050_P10.ab1: 5537-6343 , 053_E12.ab1: 5529-6260

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004449_010 0.0 - - lipase [Ricinus communis]
2 Hb_004657_010 0.1229968118 - - PREDICTED: uncharacterized protein LOC105639764 [Jatropha curcas]
3 Hb_178345_010 0.1494739123 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
4 Hb_000340_480 0.1497130572 - - -
5 Hb_000977_140 0.1567318159 - - PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]
6 Hb_006557_010 0.1586705289 - - -
7 Hb_012395_100 0.1691535065 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
8 Hb_004852_020 0.1695293217 - - -
9 Hb_077562_040 0.171457844 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
10 Hb_005496_060 0.1726705837 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
11 Hb_002081_100 0.1733120127 - - -
12 Hb_004375_060 0.1738633204 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
13 Hb_023675_010 0.1754356098 - - -
14 Hb_000329_530 0.1844865293 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
15 Hb_001741_050 0.1917178526 - - -
16 Hb_000352_150 0.1943393082 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
17 Hb_002835_190 0.1946133172 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
18 Hb_000175_520 0.195560667 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_005063_010 0.198414142 - - HEV1.1 [Hevea brasiliensis]
20 Hb_000329_620 0.1985382275 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]

Gene co-expression network

sample Hb_004449_010 Hb_004449_010 Hb_004657_010 Hb_004657_010 Hb_004449_010--Hb_004657_010 Hb_178345_010 Hb_178345_010 Hb_004449_010--Hb_178345_010 Hb_000340_480 Hb_000340_480 Hb_004449_010--Hb_000340_480 Hb_000977_140 Hb_000977_140 Hb_004449_010--Hb_000977_140 Hb_006557_010 Hb_006557_010 Hb_004449_010--Hb_006557_010 Hb_012395_100 Hb_012395_100 Hb_004449_010--Hb_012395_100 Hb_004657_010--Hb_006557_010 Hb_000329_620 Hb_000329_620 Hb_004657_010--Hb_000329_620 Hb_000352_150 Hb_000352_150 Hb_004657_010--Hb_000352_150 Hb_005496_060 Hb_005496_060 Hb_004657_010--Hb_005496_060 Hb_002835_190 Hb_002835_190 Hb_004657_010--Hb_002835_190 Hb_002851_060 Hb_002851_060 Hb_178345_010--Hb_002851_060 Hb_044662_040 Hb_044662_040 Hb_178345_010--Hb_044662_040 Hb_178345_010--Hb_000977_140 Hb_178345_010--Hb_012395_100 Hb_000175_520 Hb_000175_520 Hb_178345_010--Hb_000175_520 Hb_004375_060 Hb_004375_060 Hb_178345_010--Hb_004375_060 Hb_002081_100 Hb_002081_100 Hb_000340_480--Hb_002081_100 Hb_000340_480--Hb_004375_060 Hb_000612_070 Hb_000612_070 Hb_000340_480--Hb_000612_070 Hb_000340_480--Hb_005496_060 Hb_000340_480--Hb_002835_190 Hb_000977_140--Hb_044662_040 Hb_007992_030 Hb_007992_030 Hb_000977_140--Hb_007992_030 Hb_000183_070 Hb_000183_070 Hb_000977_140--Hb_000183_070 Hb_001437_300 Hb_001437_300 Hb_000977_140--Hb_001437_300 Hb_000038_130 Hb_000038_130 Hb_000977_140--Hb_000038_130 Hb_006557_010--Hb_005496_060 Hb_006557_010--Hb_000329_620 Hb_006557_010--Hb_002835_190 Hb_006557_010--Hb_000352_150 Hb_012395_100--Hb_000175_520 Hb_001248_020 Hb_001248_020 Hb_012395_100--Hb_001248_020 Hb_023675_010 Hb_023675_010 Hb_012395_100--Hb_023675_010 Hb_036369_010 Hb_036369_010 Hb_012395_100--Hb_036369_010 Hb_004545_160 Hb_004545_160 Hb_012395_100--Hb_004545_160 Hb_004852_020 Hb_004852_020 Hb_012395_100--Hb_004852_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
98.2436 0.658259 0.0416252 0.330833 135.294 115.709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
105.604 79.9889 7.33249 21.7985 0

CAGE analysis