Hb_004449_040

Information

Type -
Description -
Location Contig4449: 32812-37737
Sequence    

Annotation

kegg
ID rcu:RCOM_0622540
description Cell division control protein, putative
nr
ID XP_012068765.1
description PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
swissprot
ID Q9UUH0
description Uncharacterized protein C630.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC630.12 PE=3 SV=1
trembl
ID B9SHW7
description Cell division control protein, putative OS=Ricinus communis GN=RCOM_0622540 PE=4 SV=1
Gene Ontology
ID GO:0012505
description cell division control

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42809: 36521-37788
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004449_040 0.0 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
2 Hb_000684_120 0.1435707296 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
3 Hb_000563_440 0.1639977408 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
4 Hb_001114_170 0.1706983711 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005271_140 0.1741574155 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]
6 Hb_101146_010 0.1751854648 - - PREDICTED: peregrin-like [Jatropha curcas]
7 Hb_002411_060 0.1784437269 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]
8 Hb_010436_080 0.179997581 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
9 Hb_089140_090 0.1801393071 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
10 Hb_000139_280 0.1811764456 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
11 Hb_002960_090 0.1826807919 - - protein with unknown function [Ricinus communis]
12 Hb_124677_030 0.1832521541 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
13 Hb_002027_440 0.1838534747 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002235_380 0.1841659565 - - hypothetical protein JCGZ_19860 [Jatropha curcas]
15 Hb_002045_190 0.193329945 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
16 Hb_003178_020 0.1944168327 transcription factor TF Family: B3 conserved hypothetical protein [Ricinus communis]
17 Hb_004162_230 0.1971153031 - - PREDICTED: histone H2B [Jatropha curcas]
18 Hb_011242_050 0.1977914603 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa [Jatropha curcas]
19 Hb_000934_150 0.2023888047 - - hypothetical protein POPTR_0005s21000g [Populus trichocarpa]
20 Hb_010534_020 0.2024208406 - - PREDICTED: protein XRI1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004449_040 Hb_004449_040 Hb_000684_120 Hb_000684_120 Hb_004449_040--Hb_000684_120 Hb_000563_440 Hb_000563_440 Hb_004449_040--Hb_000563_440 Hb_001114_170 Hb_001114_170 Hb_004449_040--Hb_001114_170 Hb_005271_140 Hb_005271_140 Hb_004449_040--Hb_005271_140 Hb_101146_010 Hb_101146_010 Hb_004449_040--Hb_101146_010 Hb_002411_060 Hb_002411_060 Hb_004449_040--Hb_002411_060 Hb_030627_070 Hb_030627_070 Hb_000684_120--Hb_030627_070 Hb_000684_120--Hb_000563_440 Hb_000684_120--Hb_005271_140 Hb_001232_090 Hb_001232_090 Hb_000684_120--Hb_001232_090 Hb_124677_030 Hb_124677_030 Hb_000684_120--Hb_124677_030 Hb_002540_070 Hb_002540_070 Hb_000563_440--Hb_002540_070 Hb_002235_380 Hb_002235_380 Hb_000563_440--Hb_002235_380 Hb_004155_020 Hb_004155_020 Hb_000563_440--Hb_004155_020 Hb_000563_440--Hb_005271_140 Hb_001863_160 Hb_001863_160 Hb_000563_440--Hb_001863_160 Hb_089140_090 Hb_089140_090 Hb_001114_170--Hb_089140_090 Hb_000757_130 Hb_000757_130 Hb_001114_170--Hb_000757_130 Hb_015807_160 Hb_015807_160 Hb_001114_170--Hb_015807_160 Hb_002027_440 Hb_002027_440 Hb_001114_170--Hb_002027_440 Hb_001863_070 Hb_001863_070 Hb_001114_170--Hb_001863_070 Hb_001114_170--Hb_101146_010 Hb_006970_130 Hb_006970_130 Hb_005271_140--Hb_006970_130 Hb_005271_140--Hb_001232_090 Hb_010534_020 Hb_010534_020 Hb_005271_140--Hb_010534_020 Hb_005271_140--Hb_000757_130 Hb_004117_190 Hb_004117_190 Hb_101146_010--Hb_004117_190 Hb_002960_090 Hb_002960_090 Hb_101146_010--Hb_002960_090 Hb_101146_010--Hb_000757_130 Hb_007741_130 Hb_007741_130 Hb_101146_010--Hb_007741_130 Hb_000046_310 Hb_000046_310 Hb_101146_010--Hb_000046_310 Hb_002411_060--Hb_000684_120 Hb_004162_230 Hb_004162_230 Hb_002411_060--Hb_004162_230 Hb_000345_260 Hb_000345_260 Hb_002411_060--Hb_000345_260 Hb_002837_050 Hb_002837_050 Hb_002411_060--Hb_002837_050 Hb_002411_060--Hb_004117_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0600834 0.115306 0.928828 0.544247 0.0345411 0.0341664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.164077 0.322728 0 0.197232 0.135646

CAGE analysis