Hb_004449_100

Information

Type -
Description -
Location Contig4449: 62002-62912
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004449_100 0.0 - - -
2 Hb_009767_040 0.0935900466 - - PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica]
3 Hb_057343_010 0.1011853608 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
4 Hb_000193_130 0.106785665 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_001141_260 0.1090613715 - - Uncharacterized protein TCM_020647 [Theobroma cacao]
6 Hb_000521_030 0.1111937136 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
7 Hb_025557_080 0.1123005057 transcription factor TF Family: zf-HD -
8 Hb_003788_030 0.1164611091 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
9 Hb_000327_350 0.1164963149 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
10 Hb_000244_290 0.1171833086 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
11 Hb_000243_240 0.1214124458 - - cytochrome P450 family protein [Populus trichocarpa]
12 Hb_001174_040 0.1228974064 - - -
13 Hb_002785_020 0.1231029448 - - PREDICTED: laccase-4-like [Jatropha curcas]
14 Hb_011344_110 0.1236159781 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
15 Hb_188281_020 0.125805031 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
16 Hb_155215_030 0.1260280179 - - Cucumisin precursor, putative [Ricinus communis]
17 Hb_000291_240 0.1264108668 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
18 Hb_003528_090 0.1326065988 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
19 Hb_002031_020 0.1341717634 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
20 Hb_001935_200 0.1361352113 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004449_100 Hb_004449_100 Hb_009767_040 Hb_009767_040 Hb_004449_100--Hb_009767_040 Hb_057343_010 Hb_057343_010 Hb_004449_100--Hb_057343_010 Hb_000193_130 Hb_000193_130 Hb_004449_100--Hb_000193_130 Hb_001141_260 Hb_001141_260 Hb_004449_100--Hb_001141_260 Hb_000521_030 Hb_000521_030 Hb_004449_100--Hb_000521_030 Hb_025557_080 Hb_025557_080 Hb_004449_100--Hb_025557_080 Hb_009767_040--Hb_000521_030 Hb_009767_040--Hb_000193_130 Hb_002785_020 Hb_002785_020 Hb_009767_040--Hb_002785_020 Hb_003788_030 Hb_003788_030 Hb_009767_040--Hb_003788_030 Hb_000327_350 Hb_000327_350 Hb_009767_040--Hb_000327_350 Hb_057343_010--Hb_000193_130 Hb_057343_010--Hb_009767_040 Hb_057343_010--Hb_000521_030 Hb_057343_010--Hb_000327_350 Hb_003528_090 Hb_003528_090 Hb_057343_010--Hb_003528_090 Hb_000193_130--Hb_000521_030 Hb_000193_130--Hb_002785_020 Hb_000193_130--Hb_000327_350 Hb_000193_130--Hb_003788_030 Hb_000617_070 Hb_000617_070 Hb_001141_260--Hb_000617_070 Hb_000243_240 Hb_000243_240 Hb_001141_260--Hb_000243_240 Hb_000959_200 Hb_000959_200 Hb_001141_260--Hb_000959_200 Hb_002186_190 Hb_002186_190 Hb_001141_260--Hb_002186_190 Hb_002215_020 Hb_002215_020 Hb_001141_260--Hb_002215_020 Hb_000521_030--Hb_000327_350 Hb_002757_040 Hb_002757_040 Hb_000521_030--Hb_002757_040 Hb_000521_030--Hb_002785_020 Hb_000816_090 Hb_000816_090 Hb_000521_030--Hb_000816_090 Hb_025557_070 Hb_025557_070 Hb_025557_080--Hb_025557_070 Hb_025161_060 Hb_025161_060 Hb_025557_080--Hb_025161_060 Hb_000291_240 Hb_000291_240 Hb_025557_080--Hb_000291_240 Hb_000188_040 Hb_000188_040 Hb_025557_080--Hb_000188_040 Hb_188281_020 Hb_188281_020 Hb_025557_080--Hb_188281_020 Hb_002031_020 Hb_002031_020 Hb_025557_080--Hb_002031_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.514674 0 15.1329 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.196202 2.38245

CAGE analysis