Hb_004449_130

Information

Type -
Description -
Location Contig4449: 78030-93424
Sequence    

Annotation

kegg
ID rcu:RCOM_0622010
description Exportin-7, putative
nr
ID XP_012068753.1
description PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
swissprot
ID Q5ZLT0
description Exportin-7 OS=Gallus gallus GN=XPO7 PE=2 SV=1
trembl
ID A0A067KWK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24595 PE=4 SV=1
Gene Ontology
ID GO:0008536
description exportin-7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42831: 78144-88472 , PASA_asmbl_42832: 89307-89617 , PASA_asmbl_42833: 91456-91707 , PASA_asmbl_42834: 92484-93209
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004449_130 0.0 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
2 Hb_000637_110 0.082587525 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
3 Hb_005918_010 0.0852558153 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
4 Hb_000077_140 0.0872237543 - - structural constituent of cell wall, putative [Ricinus communis]
5 Hb_005634_010 0.0873885599 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_000140_290 0.0915881081 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
7 Hb_005137_040 0.0916844752 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
8 Hb_003544_060 0.0919566547 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
9 Hb_005488_020 0.0967095551 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
10 Hb_000441_220 0.0971938954 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_001257_030 0.0973177226 - - PREDICTED: serine/threonine-protein kinase Nek5 [Jatropha curcas]
12 Hb_000088_170 0.0980853778 - - PREDICTED: ran-binding protein 10-like [Jatropha curcas]
13 Hb_000856_040 0.0981110847 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105640470 [Jatropha curcas]
14 Hb_012506_030 0.0992855932 - - AP-2 complex subunit alpha, putative [Ricinus communis]
15 Hb_001008_170 0.1018134663 transcription factor TF Family: mTERF RNA binding protein, putative [Ricinus communis]
16 Hb_000392_420 0.102993548 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
17 Hb_002445_060 0.1034424641 - - arf gtpase-activating protein, putative [Ricinus communis]
18 Hb_001087_030 0.1040787392 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
19 Hb_000069_310 0.1058227582 - - ubiquitin ligase [Cucumis melo subsp. melo]
20 Hb_000349_260 0.1061485644 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]

Gene co-expression network

sample Hb_004449_130 Hb_004449_130 Hb_000637_110 Hb_000637_110 Hb_004449_130--Hb_000637_110 Hb_005918_010 Hb_005918_010 Hb_004449_130--Hb_005918_010 Hb_000077_140 Hb_000077_140 Hb_004449_130--Hb_000077_140 Hb_005634_010 Hb_005634_010 Hb_004449_130--Hb_005634_010 Hb_000140_290 Hb_000140_290 Hb_004449_130--Hb_000140_290 Hb_005137_040 Hb_005137_040 Hb_004449_130--Hb_005137_040 Hb_000349_260 Hb_000349_260 Hb_000637_110--Hb_000349_260 Hb_000637_110--Hb_005137_040 Hb_001473_160 Hb_001473_160 Hb_000637_110--Hb_001473_160 Hb_000088_170 Hb_000088_170 Hb_000637_110--Hb_000088_170 Hb_000300_500 Hb_000300_500 Hb_000637_110--Hb_000300_500 Hb_006455_120 Hb_006455_120 Hb_000637_110--Hb_006455_120 Hb_005918_010--Hb_005137_040 Hb_012506_030 Hb_012506_030 Hb_005918_010--Hb_012506_030 Hb_003544_060 Hb_003544_060 Hb_005918_010--Hb_003544_060 Hb_001153_190 Hb_001153_190 Hb_005918_010--Hb_001153_190 Hb_105105_010 Hb_105105_010 Hb_005918_010--Hb_105105_010 Hb_000441_220 Hb_000441_220 Hb_005918_010--Hb_000441_220 Hb_000331_680 Hb_000331_680 Hb_000077_140--Hb_000331_680 Hb_000603_280 Hb_000603_280 Hb_000077_140--Hb_000603_280 Hb_002843_120 Hb_002843_120 Hb_000077_140--Hb_002843_120 Hb_003504_030 Hb_003504_030 Hb_000077_140--Hb_003504_030 Hb_000069_310 Hb_000069_310 Hb_000077_140--Hb_000069_310 Hb_000915_180 Hb_000915_180 Hb_000077_140--Hb_000915_180 Hb_000556_120 Hb_000556_120 Hb_005634_010--Hb_000556_120 Hb_005634_010--Hb_000140_290 Hb_000329_060 Hb_000329_060 Hb_005634_010--Hb_000329_060 Hb_000011_060 Hb_000011_060 Hb_005634_010--Hb_000011_060 Hb_000836_460 Hb_000836_460 Hb_005634_010--Hb_000836_460 Hb_005634_010--Hb_003544_060 Hb_010142_020 Hb_010142_020 Hb_000140_290--Hb_010142_020 Hb_000140_290--Hb_000556_120 Hb_001500_140 Hb_001500_140 Hb_000140_290--Hb_001500_140 Hb_093458_040 Hb_093458_040 Hb_000140_290--Hb_093458_040 Hb_013726_090 Hb_013726_090 Hb_000140_290--Hb_013726_090 Hb_005137_040--Hb_012506_030 Hb_005137_040--Hb_105105_010 Hb_005137_040--Hb_000088_170 Hb_005137_040--Hb_000441_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.70184 8.77143 9.69454 11.6677 5.6472 5.70746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.63258 4.10156 9.791 8.22212 7.02938

CAGE analysis