Hb_004449_140

Information

Type transcription factor
Description TF Family: MYB
Location Contig4449: 98187-102784
Sequence    

Annotation

kegg
ID rcu:RCOM_0622120
description r2r3-myb transcription factor, putative
nr
ID XP_012068750.1
description PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
swissprot
ID Q0JIC2
description Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1
trembl
ID A0A067L7W6
description MYB family protein OS=Jatropha curcas GN=JCGZ_24594 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor gamyb-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42835: 97598-102573 , PASA_asmbl_42836: 100552-100858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004449_140 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
2 Hb_001214_190 0.1169527064 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
3 Hb_176472_020 0.1475121367 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003430_040 0.1582186578 - - spermidine synthase 1, putative [Ricinus communis]
5 Hb_074792_010 0.1646882199 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
6 Hb_003938_170 0.1679016776 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
7 Hb_002218_100 0.1685514284 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
8 Hb_000732_030 0.1759268597 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000185_230 0.1772481543 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_008173_060 0.1815169915 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
11 Hb_000347_140 0.1839891113 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_003549_130 0.1870872129 - - neutral/alkaline invertase [Manihot esculenta]
13 Hb_044662_050 0.1889266459 - - hypothetical protein POPTR_0002s08440g [Populus trichocarpa]
14 Hb_000653_020 0.1940066273 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]
15 Hb_000069_240 0.1983730032 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3-like [Jatropha curcas]
16 Hb_013016_010 0.1992609685 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003874_010 0.1993403607 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
18 Hb_004116_120 0.2005742169 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
19 Hb_124951_010 0.2018730737 - - chitinase-like protein [Hevea brasiliensis]
20 Hb_000345_410 0.2032023644 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]

Gene co-expression network

sample Hb_004449_140 Hb_004449_140 Hb_001214_190 Hb_001214_190 Hb_004449_140--Hb_001214_190 Hb_176472_020 Hb_176472_020 Hb_004449_140--Hb_176472_020 Hb_003430_040 Hb_003430_040 Hb_004449_140--Hb_003430_040 Hb_074792_010 Hb_074792_010 Hb_004449_140--Hb_074792_010 Hb_003938_170 Hb_003938_170 Hb_004449_140--Hb_003938_170 Hb_002218_100 Hb_002218_100 Hb_004449_140--Hb_002218_100 Hb_000185_230 Hb_000185_230 Hb_001214_190--Hb_000185_230 Hb_124951_010 Hb_124951_010 Hb_001214_190--Hb_124951_010 Hb_001214_190--Hb_003430_040 Hb_143813_020 Hb_143813_020 Hb_001214_190--Hb_143813_020 Hb_000684_100 Hb_000684_100 Hb_001214_190--Hb_000684_100 Hb_176472_020--Hb_002218_100 Hb_002217_190 Hb_002217_190 Hb_176472_020--Hb_002217_190 Hb_007545_110 Hb_007545_110 Hb_176472_020--Hb_007545_110 Hb_006775_070 Hb_006775_070 Hb_176472_020--Hb_006775_070 Hb_008173_060 Hb_008173_060 Hb_176472_020--Hb_008173_060 Hb_003430_040--Hb_074792_010 Hb_000347_140 Hb_000347_140 Hb_003430_040--Hb_000347_140 Hb_003874_010 Hb_003874_010 Hb_003430_040--Hb_003874_010 Hb_000732_030 Hb_000732_030 Hb_003430_040--Hb_000732_030 Hb_000032_200 Hb_000032_200 Hb_003430_040--Hb_000032_200 Hb_000300_710 Hb_000300_710 Hb_003430_040--Hb_000300_710 Hb_074792_010--Hb_000300_710 Hb_074792_010--Hb_000347_140 Hb_074792_010--Hb_000732_030 Hb_000638_260 Hb_000638_260 Hb_074792_010--Hb_000638_260 Hb_074792_010--Hb_003874_010 Hb_003938_170--Hb_003430_040 Hb_003938_170--Hb_003874_010 Hb_003938_170--Hb_000032_200 Hb_001198_080 Hb_001198_080 Hb_003938_170--Hb_001198_080 Hb_003938_170--Hb_001214_190 Hb_003938_170--Hb_000347_140 Hb_000563_440 Hb_000563_440 Hb_002218_100--Hb_000563_440 Hb_000123_140 Hb_000123_140 Hb_002218_100--Hb_000123_140 Hb_000120_350 Hb_000120_350 Hb_002218_100--Hb_000120_350 Hb_000959_190 Hb_000959_190 Hb_002218_100--Hb_000959_190 Hb_004125_060 Hb_004125_060 Hb_002218_100--Hb_004125_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.72704 7.08394 37.823 5.25306 1.50411 1.98836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.08506 3.93478 3.04668 1.16038 0.975149

CAGE analysis