Hb_004449_170

Information

Type -
Description -
Location Contig4449: 108883-112171
Sequence    

Annotation

kegg
ID rcu:RCOM_0622250
description hypothetical protein
nr
ID XP_012068747.1
description PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWQ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24591 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42841: 108890-112146
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004449_170 0.0 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
2 Hb_001329_290 0.0436292093 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
3 Hb_002477_300 0.0544723817 - - transcription factor, putative [Ricinus communis]
4 Hb_005588_030 0.0739375471 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
5 Hb_004787_060 0.0740106309 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
6 Hb_001512_060 0.0772107306 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
7 Hb_000286_070 0.0802564039 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
8 Hb_000465_090 0.0819241458 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
9 Hb_006120_070 0.0831116188 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
10 Hb_001534_120 0.0842707791 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
11 Hb_001564_130 0.0877701672 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_010921_010 0.0880992937 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
13 Hb_000836_170 0.0887375499 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
14 Hb_005697_060 0.0910970841 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
15 Hb_004116_060 0.0914118157 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
16 Hb_001012_010 0.0930794791 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
17 Hb_003292_040 0.0937941234 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
18 Hb_007163_070 0.0956866737 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
19 Hb_000362_200 0.095895574 - - exonuclease family protein [Populus trichocarpa]
20 Hb_004093_090 0.0979944983 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]

Gene co-expression network

sample Hb_004449_170 Hb_004449_170 Hb_001329_290 Hb_001329_290 Hb_004449_170--Hb_001329_290 Hb_002477_300 Hb_002477_300 Hb_004449_170--Hb_002477_300 Hb_005588_030 Hb_005588_030 Hb_004449_170--Hb_005588_030 Hb_004787_060 Hb_004787_060 Hb_004449_170--Hb_004787_060 Hb_001512_060 Hb_001512_060 Hb_004449_170--Hb_001512_060 Hb_000286_070 Hb_000286_070 Hb_004449_170--Hb_000286_070 Hb_001329_290--Hb_000286_070 Hb_001329_290--Hb_004787_060 Hb_001564_130 Hb_001564_130 Hb_001329_290--Hb_001564_130 Hb_003292_040 Hb_003292_040 Hb_001329_290--Hb_003292_040 Hb_000265_240 Hb_000265_240 Hb_001329_290--Hb_000265_240 Hb_146673_010 Hb_146673_010 Hb_002477_300--Hb_146673_010 Hb_000465_090 Hb_000465_090 Hb_002477_300--Hb_000465_090 Hb_000731_160 Hb_000731_160 Hb_002477_300--Hb_000731_160 Hb_002477_300--Hb_001329_290 Hb_001012_010 Hb_001012_010 Hb_002477_300--Hb_001012_010 Hb_005588_030--Hb_001012_010 Hb_004116_060 Hb_004116_060 Hb_005588_030--Hb_004116_060 Hb_004093_090 Hb_004093_090 Hb_005588_030--Hb_004093_090 Hb_000107_030 Hb_000107_030 Hb_005588_030--Hb_000107_030 Hb_073973_130 Hb_073973_130 Hb_005588_030--Hb_073973_130 Hb_120410_010 Hb_120410_010 Hb_005588_030--Hb_120410_010 Hb_005322_040 Hb_005322_040 Hb_004787_060--Hb_005322_040 Hb_004787_060--Hb_000286_070 Hb_021419_020 Hb_021419_020 Hb_004787_060--Hb_021419_020 Hb_010921_010 Hb_010921_010 Hb_004787_060--Hb_010921_010 Hb_001512_060--Hb_010921_010 Hb_000362_200 Hb_000362_200 Hb_001512_060--Hb_000362_200 Hb_001534_120 Hb_001534_120 Hb_001512_060--Hb_001534_120 Hb_007477_070 Hb_007477_070 Hb_001512_060--Hb_007477_070 Hb_007154_020 Hb_007154_020 Hb_001512_060--Hb_007154_020 Hb_002346_020 Hb_002346_020 Hb_001512_060--Hb_002346_020 Hb_000009_530 Hb_000009_530 Hb_000286_070--Hb_000009_530 Hb_000286_070--Hb_001534_120 Hb_000286_070--Hb_003292_040 Hb_003935_020 Hb_003935_020 Hb_000286_070--Hb_003935_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3432 5.01537 16.4795 5.69507 15.6864 11.2952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5409 21.5341 7.39851 7.32145 7.50315

CAGE analysis