Hb_004449_180

Information

Type -
Description -
Location Contig4449: 112576-116812
Sequence    

Annotation

kegg
ID pop:POPTR_0001s07300g
description POPTRDRAFT_178300; hypothetical protein
nr
ID XP_012068746.1
description PREDICTED: SAC3 family protein 1 [Jatropha curcas]
swissprot
ID O74889
description SAC3 family protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC576.05 PE=1 SV=1
trembl
ID B9GLT3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07300g PE=4 SV=2
Gene Ontology
ID GO:0048573
description sac3 ganp nin1 mts3 eif-3 p25 family isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42842: 112828-114885 , PASA_asmbl_42843: 115324-116448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004449_180 0.0 - - PREDICTED: SAC3 family protein 1 [Jatropha curcas]
2 Hb_000179_270 0.1123178301 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
3 Hb_002272_270 0.1132890794 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
4 Hb_011344_200 0.1135196106 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
5 Hb_000555_100 0.1149922879 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
6 Hb_000889_010 0.1171969475 transcription factor TF Family: MYB-related hypothetical protein PRUPE_ppa014728mg [Prunus persica]
7 Hb_000087_070 0.1183551077 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
8 Hb_000046_170 0.1205757987 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
9 Hb_000165_080 0.1222724076 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
10 Hb_001728_040 0.1226587827 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
11 Hb_177994_010 0.1226645855 - - PREDICTED: cullin-1 [Jatropha curcas]
12 Hb_000983_050 0.1241345664 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000116_490 0.124950669 - - PREDICTED: WD repeat-containing protein 55 homolog [Jatropha curcas]
14 Hb_010174_150 0.1251679358 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_000847_060 0.1253734353 - - hypothetical protein [Jatropha curcas]
16 Hb_000367_090 0.1258531054 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
17 Hb_004357_050 0.1270242079 - - PREDICTED: histone deacetylase HDT1-like [Jatropha curcas]
18 Hb_000913_040 0.1279995965 - - Methyltransferase-related protein, putative [Theobroma cacao]
19 Hb_000116_560 0.1288971823 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
20 Hb_004607_090 0.1310356327 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]

Gene co-expression network

sample Hb_004449_180 Hb_004449_180 Hb_000179_270 Hb_000179_270 Hb_004449_180--Hb_000179_270 Hb_002272_270 Hb_002272_270 Hb_004449_180--Hb_002272_270 Hb_011344_200 Hb_011344_200 Hb_004449_180--Hb_011344_200 Hb_000555_100 Hb_000555_100 Hb_004449_180--Hb_000555_100 Hb_000889_010 Hb_000889_010 Hb_004449_180--Hb_000889_010 Hb_000087_070 Hb_000087_070 Hb_004449_180--Hb_000087_070 Hb_000179_270--Hb_000087_070 Hb_000179_270--Hb_002272_270 Hb_002820_020 Hb_002820_020 Hb_000179_270--Hb_002820_020 Hb_001189_070 Hb_001189_070 Hb_000179_270--Hb_001189_070 Hb_002042_150 Hb_002042_150 Hb_000179_270--Hb_002042_150 Hb_001269_190 Hb_001269_190 Hb_000179_270--Hb_001269_190 Hb_000840_200 Hb_000840_200 Hb_002272_270--Hb_000840_200 Hb_002272_270--Hb_000087_070 Hb_015675_040 Hb_015675_040 Hb_002272_270--Hb_015675_040 Hb_005288_130 Hb_005288_130 Hb_002272_270--Hb_005288_130 Hb_157023_020 Hb_157023_020 Hb_002272_270--Hb_157023_020 Hb_011344_200--Hb_157023_020 Hb_000035_160 Hb_000035_160 Hb_011344_200--Hb_000035_160 Hb_027472_140 Hb_027472_140 Hb_011344_200--Hb_027472_140 Hb_001726_080 Hb_001726_080 Hb_011344_200--Hb_001726_080 Hb_002092_120 Hb_002092_120 Hb_011344_200--Hb_002092_120 Hb_005588_060 Hb_005588_060 Hb_000555_100--Hb_005588_060 Hb_168893_020 Hb_168893_020 Hb_000555_100--Hb_168893_020 Hb_007257_060 Hb_007257_060 Hb_000555_100--Hb_007257_060 Hb_001369_250 Hb_001369_250 Hb_000555_100--Hb_001369_250 Hb_000167_010 Hb_000167_010 Hb_000555_100--Hb_000167_010 Hb_003058_120 Hb_003058_120 Hb_000555_100--Hb_003058_120 Hb_009898_040 Hb_009898_040 Hb_000889_010--Hb_009898_040 Hb_000684_520 Hb_000684_520 Hb_000889_010--Hb_000684_520 Hb_001799_060 Hb_001799_060 Hb_000889_010--Hb_001799_060 Hb_000889_010--Hb_168893_020 Hb_001148_090 Hb_001148_090 Hb_000889_010--Hb_001148_090 Hb_004607_090 Hb_004607_090 Hb_000087_070--Hb_004607_090 Hb_000087_070--Hb_001269_190 Hb_000087_070--Hb_000840_200 Hb_003878_150 Hb_003878_150 Hb_000087_070--Hb_003878_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.84273 1.91568 2.10691 3.87507 0.824319 1.14567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.9447 3.17588 0.479992 2.57065 1.79809

CAGE analysis