Hb_004449_190

Information

Type transcription factor
Description TF Family: mTERF
Location Contig4449: 117087-118019
Sequence    

Annotation

kegg
ID pop:POPTR_0001s07180g
description POPTRDRAFT_547762; hypothetical protein
nr
ID XP_012068749.1
description PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L028
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24592 PE=4 SV=1
Gene Ontology
ID GO:0005739
description PREDICTED: uncharacterized protein LOC105631286

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42844: 117611-117890
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004449_190 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
2 Hb_002194_080 0.1696144577 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
3 Hb_002352_040 0.3039658725 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
4 Hb_000608_060 0.3409194556 - - -
5 Hb_001711_070 0.348598514 - - -
6 Hb_004931_080 0.3658066938 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Jatropha curcas]
7 Hb_007777_020 0.3747330364 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
8 Hb_036790_130 0.3752345341 - - -
9 Hb_007229_010 0.3791020223 - - PREDICTED: uncharacterized protein LOC105130855 [Populus euphratica]
10 Hb_000529_100 0.3845064661 - - hypothetical protein POPTR_0009s05980g [Populus trichocarpa]
11 Hb_002025_310 0.3849199013 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_000377_100 0.3890669095 - - LINE-type retrotransposon LIb DNA, Insertion at the S11 site-like protein [Theobroma cacao]
13 Hb_005489_030 0.3890971792 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
14 Hb_000270_300 0.3935273902 - - -
15 Hb_019715_020 0.3969219112 - - -
16 Hb_002603_080 0.3976186842 - - hypothetical protein MTR_7g114400 [Medicago truncatula]
17 Hb_003041_060 0.4002197026 - - -
18 Hb_007594_100 0.4004507947 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
19 Hb_000122_140 0.4017068553 - - -
20 Hb_037793_010 0.4023657179 - - PREDICTED: microtubule-associated protein 70-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004449_190 Hb_004449_190 Hb_002194_080 Hb_002194_080 Hb_004449_190--Hb_002194_080 Hb_002352_040 Hb_002352_040 Hb_004449_190--Hb_002352_040 Hb_000608_060 Hb_000608_060 Hb_004449_190--Hb_000608_060 Hb_001711_070 Hb_001711_070 Hb_004449_190--Hb_001711_070 Hb_004931_080 Hb_004931_080 Hb_004449_190--Hb_004931_080 Hb_007777_020 Hb_007777_020 Hb_004449_190--Hb_007777_020 Hb_002194_080--Hb_002352_040 Hb_004413_040 Hb_004413_040 Hb_002194_080--Hb_004413_040 Hb_005489_030 Hb_005489_030 Hb_002194_080--Hb_005489_030 Hb_000377_100 Hb_000377_100 Hb_002194_080--Hb_000377_100 Hb_002194_080--Hb_007777_020 Hb_056531_040 Hb_056531_040 Hb_002352_040--Hb_056531_040 Hb_072775_010 Hb_072775_010 Hb_002352_040--Hb_072775_010 Hb_086287_020 Hb_086287_020 Hb_002352_040--Hb_086287_020 Hb_071923_010 Hb_071923_010 Hb_002352_040--Hb_071923_010 Hb_000009_620 Hb_000009_620 Hb_000608_060--Hb_000009_620 Hb_000252_250 Hb_000252_250 Hb_000608_060--Hb_000252_250 Hb_011218_080 Hb_011218_080 Hb_000608_060--Hb_011218_080 Hb_002259_040 Hb_002259_040 Hb_000608_060--Hb_002259_040 Hb_002025_310 Hb_002025_310 Hb_000608_060--Hb_002025_310 Hb_002299_050 Hb_002299_050 Hb_000608_060--Hb_002299_050 Hb_074701_010 Hb_074701_010 Hb_001711_070--Hb_074701_010 Hb_001023_020 Hb_001023_020 Hb_001711_070--Hb_001023_020 Hb_004429_030 Hb_004429_030 Hb_001711_070--Hb_004429_030 Hb_007218_090 Hb_007218_090 Hb_001711_070--Hb_007218_090 Hb_008887_010 Hb_008887_010 Hb_001711_070--Hb_008887_010 Hb_000219_070 Hb_000219_070 Hb_001711_070--Hb_000219_070 Hb_000959_310 Hb_000959_310 Hb_004931_080--Hb_000959_310 Hb_002301_360 Hb_002301_360 Hb_004931_080--Hb_002301_360 Hb_001140_070 Hb_001140_070 Hb_004931_080--Hb_001140_070 Hb_009780_080 Hb_009780_080 Hb_004931_080--Hb_009780_080 Hb_006970_080 Hb_006970_080 Hb_004931_080--Hb_006970_080 Hb_000510_330 Hb_000510_330 Hb_004931_080--Hb_000510_330 Hb_031866_060 Hb_031866_060 Hb_007777_020--Hb_031866_060 Hb_033642_100 Hb_033642_100 Hb_007777_020--Hb_033642_100 Hb_000866_420 Hb_000866_420 Hb_007777_020--Hb_000866_420 Hb_041392_010 Hb_041392_010 Hb_007777_020--Hb_041392_010 Hb_012132_040 Hb_012132_040 Hb_007777_020--Hb_012132_040 Hb_000159_110 Hb_000159_110 Hb_007777_020--Hb_000159_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0508555 0 0.124524 0 0.0512353 0.181988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.118612 0 0 0.115478 0

CAGE analysis