Hb_004449_200

Information

Type -
Description -
Location Contig4449: 118860-121050
Sequence    

Annotation

kegg
ID pop:POPTR_0003s18990g
description POPTRDRAFT_414863; hypothetical protein
nr
ID XP_011020498.1
description PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
swissprot
ID Q9M612
description Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1
trembl
ID A9PA21
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s18990g PE=2 SV=1
Gene Ontology
ID GO:0005515
description nascent polypeptide-associated complex subunit alpha-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42845: 118862-120981
cDNA
(Sanger)
(ID:Location)		 005_N21.ab1: 119039-120981 , 012_H09.ab1: 119009-120981 , 049_I12.ab1: 119319-120969 , 050_I11.ab1: 118970-120976

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004449_200 0.0 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
2 Hb_000122_020 0.0505064159 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]
3 Hb_002631_020 0.0605193159 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
4 Hb_007926_060 0.083210851 - - ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]
5 Hb_001191_090 0.0841606742 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
6 Hb_000364_030 0.0847634718 - - RNA binding protein, putative [Ricinus communis]
7 Hb_001461_010 0.0856181081 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
8 Hb_005527_040 0.0865321139 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
9 Hb_004374_140 0.0867558206 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
10 Hb_001307_090 0.087827151 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
11 Hb_006569_100 0.0884791958 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
12 Hb_006573_220 0.0890155099 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
13 Hb_006452_040 0.0890758207 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
14 Hb_003018_050 0.0891018784 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
15 Hb_020419_020 0.0904638072 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
16 Hb_004659_060 0.0910361207 - - RAS-related GTP-binding family protein [Populus trichocarpa]
17 Hb_002374_390 0.0927029932 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
18 Hb_050806_010 0.094220492 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
19 Hb_008544_010 0.0942958412 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
20 Hb_003561_030 0.0946230682 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]

Gene co-expression network

sample Hb_004449_200 Hb_004449_200 Hb_000122_020 Hb_000122_020 Hb_004449_200--Hb_000122_020 Hb_002631_020 Hb_002631_020 Hb_004449_200--Hb_002631_020 Hb_007926_060 Hb_007926_060 Hb_004449_200--Hb_007926_060 Hb_001191_090 Hb_001191_090 Hb_004449_200--Hb_001191_090 Hb_000364_030 Hb_000364_030 Hb_004449_200--Hb_000364_030 Hb_001461_010 Hb_001461_010 Hb_004449_200--Hb_001461_010 Hb_000122_020--Hb_002631_020 Hb_001307_090 Hb_001307_090 Hb_000122_020--Hb_001307_090 Hb_003018_050 Hb_003018_050 Hb_000122_020--Hb_003018_050 Hb_000122_020--Hb_001461_010 Hb_004659_060 Hb_004659_060 Hb_000122_020--Hb_004659_060 Hb_002631_020--Hb_003018_050 Hb_006452_040 Hb_006452_040 Hb_002631_020--Hb_006452_040 Hb_004374_140 Hb_004374_140 Hb_002631_020--Hb_004374_140 Hb_002631_020--Hb_001191_090 Hb_007926_060--Hb_004374_140 Hb_008544_010 Hb_008544_010 Hb_007926_060--Hb_008544_010 Hb_006573_220 Hb_006573_220 Hb_007926_060--Hb_006573_220 Hb_007926_060--Hb_001461_010 Hb_001105_070 Hb_001105_070 Hb_007926_060--Hb_001105_070 Hb_000173_220 Hb_000173_220 Hb_001191_090--Hb_000173_220 Hb_003053_030 Hb_003053_030 Hb_001191_090--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_001191_090--Hb_148200_010 Hb_001191_090--Hb_006573_220 Hb_000181_300 Hb_000181_300 Hb_001191_090--Hb_000181_300 Hb_003376_030 Hb_003376_030 Hb_001191_090--Hb_003376_030 Hb_000364_030--Hb_003053_030 Hb_002374_390 Hb_002374_390 Hb_000364_030--Hb_002374_390 Hb_000364_030--Hb_000181_300 Hb_000364_030--Hb_001191_090 Hb_000364_030--Hb_148200_010 Hb_011644_030 Hb_011644_030 Hb_000364_030--Hb_011644_030 Hb_001461_010--Hb_004374_140 Hb_001461_010--Hb_008544_010 Hb_001842_040 Hb_001842_040 Hb_001461_010--Hb_001842_040 Hb_010042_010 Hb_010042_010 Hb_001461_010--Hb_010042_010 Hb_001461_010--Hb_002631_020 Hb_000985_060 Hb_000985_060 Hb_001461_010--Hb_000985_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.1069 39.178 68.6863 180.298 82.3515 151.192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
382.745 390.616 299.469 104.029 51.2815

CAGE analysis