Hb_004449_230

Information

Type -
Description -
Location Contig4449: 152006-153109
Sequence    

Annotation

kegg
ID rcu:RCOM_1375290
description Protein kinase APK1B, chloroplast precursor, putative
nr
ID XP_002529012.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9FMY3
description Serine/threonine-protein kinase-like protein At5g23170 OS=Arabidopsis thaliana GN=At5g23170 PE=2 SV=1
trembl
ID B9SSP3
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_1375290 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase-like protein at5g23170

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004449_230 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_001001_050 0.2212257806 - - CXE protein [Hevea brasiliensis]
3 Hb_000964_100 0.2556010428 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
4 Hb_000155_060 0.2662895082 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000472_010 0.2742028473 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_000424_080 0.3120788646 - - PREDICTED: endoglucanase 16 [Jatropha curcas]
7 Hb_013877_020 0.3125510365 - - Cytochrome P450 [Theobroma cacao]
8 Hb_004064_030 0.3130971553 - - aldose-1-epimerase, putative [Ricinus communis]
9 Hb_176844_010 0.3266028272 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
10 Hb_123560_030 0.3324663541 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_002847_020 0.3346559756 - - hypothetical protein JCGZ_23832 [Jatropha curcas]
12 Hb_019592_010 0.3347282287 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
13 Hb_001077_020 0.337285541 - - hypothetical protein JCGZ_23832 [Jatropha curcas]
14 Hb_000258_150 0.3580445411 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 11-like [Jatropha curcas]
15 Hb_068347_010 0.3628908946 - - -
16 Hb_113084_010 0.3697624573 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
17 Hb_010770_010 0.3709715468 - - -
18 Hb_002843_090 0.3724909072 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
19 Hb_000668_090 0.3727387545 - - senescence-associated family protein [Populus trichocarpa]
20 Hb_002235_270 0.3741516195 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]

Gene co-expression network

sample Hb_004449_230 Hb_004449_230 Hb_001001_050 Hb_001001_050 Hb_004449_230--Hb_001001_050 Hb_000964_100 Hb_000964_100 Hb_004449_230--Hb_000964_100 Hb_000155_060 Hb_000155_060 Hb_004449_230--Hb_000155_060 Hb_000472_010 Hb_000472_010 Hb_004449_230--Hb_000472_010 Hb_000424_080 Hb_000424_080 Hb_004449_230--Hb_000424_080 Hb_013877_020 Hb_013877_020 Hb_004449_230--Hb_013877_020 Hb_001001_050--Hb_000424_080 Hb_002235_270 Hb_002235_270 Hb_001001_050--Hb_002235_270 Hb_004064_030 Hb_004064_030 Hb_001001_050--Hb_004064_030 Hb_000668_090 Hb_000668_090 Hb_001001_050--Hb_000668_090 Hb_001001_050--Hb_000964_100 Hb_000964_100--Hb_000155_060 Hb_011903_010 Hb_011903_010 Hb_000964_100--Hb_011903_010 Hb_113084_010 Hb_113084_010 Hb_000964_100--Hb_113084_010 Hb_000016_050 Hb_000016_050 Hb_000964_100--Hb_000016_050 Hb_000258_150 Hb_000258_150 Hb_000155_060--Hb_000258_150 Hb_019592_010 Hb_019592_010 Hb_000155_060--Hb_019592_010 Hb_000155_060--Hb_001001_050 Hb_022174_010 Hb_022174_010 Hb_000155_060--Hb_022174_010 Hb_021409_130 Hb_021409_130 Hb_000472_010--Hb_021409_130 Hb_001248_040 Hb_001248_040 Hb_000472_010--Hb_001248_040 Hb_001007_080 Hb_001007_080 Hb_000472_010--Hb_001007_080 Hb_000463_060 Hb_000463_060 Hb_000472_010--Hb_000463_060 Hb_123560_030 Hb_123560_030 Hb_000472_010--Hb_123560_030 Hb_145655_010 Hb_145655_010 Hb_000424_080--Hb_145655_010 Hb_000424_080--Hb_022174_010 Hb_000424_080--Hb_002235_270 Hb_000640_140 Hb_000640_140 Hb_000424_080--Hb_000640_140 Hb_000979_010 Hb_000979_010 Hb_000424_080--Hb_000979_010 Hb_176844_010 Hb_176844_010 Hb_013877_020--Hb_176844_010 Hb_000283_120 Hb_000283_120 Hb_013877_020--Hb_000283_120 Hb_001277_410 Hb_001277_410 Hb_013877_020--Hb_001277_410 Hb_020549_010 Hb_020549_010 Hb_013877_020--Hb_020549_010 Hb_004619_070 Hb_004619_070 Hb_013877_020--Hb_004619_070 Hb_000270_870 Hb_000270_870 Hb_013877_020--Hb_000270_870
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.64762 0.169832 0.04483 0.856232 0.209981 0.208726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0424793 0.508715

CAGE analysis