Hb_004449_240

Information

Type transcription factor
Description TF Family: TCP
Location Contig4449: 161076-162725
Sequence    

Annotation

kegg
ID tcc:TCM_006249
description TCP family transcription factor
nr
ID XP_012066639.1
description PREDICTED: transcription factor TCP8 [Jatropha curcas]
swissprot
ID Q9C518
description Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=1 SV=1
trembl
ID A0A067LE96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00211 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42849: 161425-163166
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004449_240 0.0 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
2 Hb_001718_050 0.1831826835 - - PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
3 Hb_002235_120 0.185514421 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
4 Hb_002742_070 0.2008509945 - - PREDICTED: villin-4-like [Jatropha curcas]
5 Hb_002159_030 0.2095890525 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
6 Hb_001508_020 0.2112324104 - - myosin vIII, putative [Ricinus communis]
7 Hb_008029_020 0.2116372893 - - PREDICTED: uncharacterized protein LOC105631777 [Jatropha curcas]
8 Hb_036702_010 0.2137617278 - - phosphoprotein phosphatase, putative [Ricinus communis]
9 Hb_012404_070 0.2144528912 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
10 Hb_002370_040 0.2145526215 - - PREDICTED: uncharacterized protein LOC105644336 [Jatropha curcas]
11 Hb_030627_040 0.2164012886 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
12 Hb_001019_120 0.2167399577 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
13 Hb_027380_230 0.2178529597 - - PREDICTED: CSC1-like protein ERD4 [Jatropha curcas]
14 Hb_009119_030 0.2184829625 - - GMFP4 [Medicago truncatula]
15 Hb_003436_050 0.2189188823 - - arf gtpase-activating protein, putative [Ricinus communis]
16 Hb_000732_170 0.219208871 - - PREDICTED: putative PAP-specific phosphatase, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_000256_210 0.2212754677 - - PREDICTED: 40S ribosomal protein S11-like [Phoenix dactylifera]
18 Hb_010925_020 0.2234843514 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
19 Hb_002708_020 0.223663271 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Jatropha curcas]
20 Hb_051437_010 0.2239340844 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004449_240 Hb_004449_240 Hb_001718_050 Hb_001718_050 Hb_004449_240--Hb_001718_050 Hb_002235_120 Hb_002235_120 Hb_004449_240--Hb_002235_120 Hb_002742_070 Hb_002742_070 Hb_004449_240--Hb_002742_070 Hb_002159_030 Hb_002159_030 Hb_004449_240--Hb_002159_030 Hb_001508_020 Hb_001508_020 Hb_004449_240--Hb_001508_020 Hb_008029_020 Hb_008029_020 Hb_004449_240--Hb_008029_020 Hb_000850_050 Hb_000850_050 Hb_001718_050--Hb_000850_050 Hb_006663_070 Hb_006663_070 Hb_001718_050--Hb_006663_070 Hb_002601_130 Hb_002601_130 Hb_001718_050--Hb_002601_130 Hb_007810_100 Hb_007810_100 Hb_001718_050--Hb_007810_100 Hb_028227_010 Hb_028227_010 Hb_001718_050--Hb_028227_010 Hb_000679_150 Hb_000679_150 Hb_001718_050--Hb_000679_150 Hb_005408_020 Hb_005408_020 Hb_002235_120--Hb_005408_020 Hb_004376_030 Hb_004376_030 Hb_002235_120--Hb_004376_030 Hb_005462_020 Hb_005462_020 Hb_002235_120--Hb_005462_020 Hb_002320_070 Hb_002320_070 Hb_002235_120--Hb_002320_070 Hb_002903_080 Hb_002903_080 Hb_002235_120--Hb_002903_080 Hb_003436_050 Hb_003436_050 Hb_002235_120--Hb_003436_050 Hb_002815_060 Hb_002815_060 Hb_002742_070--Hb_002815_060 Hb_178041_010 Hb_178041_010 Hb_002742_070--Hb_178041_010 Hb_003157_030 Hb_003157_030 Hb_002742_070--Hb_003157_030 Hb_010128_120 Hb_010128_120 Hb_002742_070--Hb_010128_120 Hb_000330_160 Hb_000330_160 Hb_002742_070--Hb_000330_160 Hb_011953_030 Hb_011953_030 Hb_002742_070--Hb_011953_030 Hb_002159_040 Hb_002159_040 Hb_002159_030--Hb_002159_040 Hb_006882_010 Hb_006882_010 Hb_002159_030--Hb_006882_010 Hb_000441_160 Hb_000441_160 Hb_002159_030--Hb_000441_160 Hb_000329_490 Hb_000329_490 Hb_002159_030--Hb_000329_490 Hb_000244_240 Hb_000244_240 Hb_002159_030--Hb_000244_240 Hb_004143_070 Hb_004143_070 Hb_002159_030--Hb_004143_070 Hb_003529_130 Hb_003529_130 Hb_001508_020--Hb_003529_130 Hb_010925_020 Hb_010925_020 Hb_001508_020--Hb_010925_020 Hb_001369_350 Hb_001369_350 Hb_001508_020--Hb_001369_350 Hb_000021_020 Hb_000021_020 Hb_001508_020--Hb_000021_020 Hb_003894_040 Hb_003894_040 Hb_001508_020--Hb_003894_040 Hb_018202_050 Hb_018202_050 Hb_001508_020--Hb_018202_050 Hb_051437_010 Hb_051437_010 Hb_008029_020--Hb_051437_010 Hb_008029_020--Hb_002235_120 Hb_000130_190 Hb_000130_190 Hb_008029_020--Hb_000130_190 Hb_051424_010 Hb_051424_010 Hb_008029_020--Hb_051424_010 Hb_019053_020 Hb_019053_020 Hb_008029_020--Hb_019053_020 Hb_008029_020--Hb_001508_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.34804 4.94921 7.43391 5.17172 15.5823 27.326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.336059 0.110166 4.02928 2.60885 7.21789

CAGE analysis