Hb_004450_010

Information

Type -
Description -
Location Contig4450: 19547-25703
Sequence    

Annotation

kegg
ID rcu:RCOM_0466760
description hypothetical protein
nr
ID XP_012089933.1
description PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
swissprot
ID Q9D853
description Protein-lysine N-methyltransferase Mettl10 OS=Mus musculus GN=Mettl10 PE=2 SV=1
trembl
ID A0A067JRR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02517 PE=4 SV=1
Gene Ontology
ID GO:0005634
description methyltransferase-like protein 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42931: 19537-19854 , PASA_asmbl_42932: 21173-21342 , PASA_asmbl_42933: 20334-23464 , PASA_asmbl_42934: 24625-25677
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004450_010 0.0 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
2 Hb_002044_060 0.0554555087 - - elongation factor ts, putative [Ricinus communis]
3 Hb_000956_030 0.0652876704 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
4 Hb_000768_110 0.0705184043 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
5 Hb_004370_030 0.0705445774 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
6 Hb_002272_180 0.0712545112 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
7 Hb_001221_040 0.0713264573 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
8 Hb_000160_040 0.0726940482 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
9 Hb_000059_150 0.0733220065 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
10 Hb_003464_020 0.073436893 - - srpk, putative [Ricinus communis]
11 Hb_000364_060 0.0738891346 - - JHL03K20.4 [Jatropha curcas]
12 Hb_000567_050 0.0755921623 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
13 Hb_002027_270 0.0767011493 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
14 Hb_004198_010 0.0768379343 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
15 Hb_008714_020 0.0774958462 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
16 Hb_021409_170 0.0780625998 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
17 Hb_003434_060 0.0782187914 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
18 Hb_025012_010 0.078253098 - - PREDICTED: importin-4 [Vitis vinifera]
19 Hb_033834_060 0.0787190684 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
20 Hb_006913_040 0.078803475 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_004450_010 Hb_004450_010 Hb_002044_060 Hb_002044_060 Hb_004450_010--Hb_002044_060 Hb_000956_030 Hb_000956_030 Hb_004450_010--Hb_000956_030 Hb_000768_110 Hb_000768_110 Hb_004450_010--Hb_000768_110 Hb_004370_030 Hb_004370_030 Hb_004450_010--Hb_004370_030 Hb_002272_180 Hb_002272_180 Hb_004450_010--Hb_002272_180 Hb_001221_040 Hb_001221_040 Hb_004450_010--Hb_001221_040 Hb_002044_060--Hb_004370_030 Hb_000567_050 Hb_000567_050 Hb_002044_060--Hb_000567_050 Hb_026099_010 Hb_026099_010 Hb_002044_060--Hb_026099_010 Hb_002942_160 Hb_002942_160 Hb_002044_060--Hb_002942_160 Hb_000789_080 Hb_000789_080 Hb_002044_060--Hb_000789_080 Hb_004198_010 Hb_004198_010 Hb_000956_030--Hb_004198_010 Hb_003434_060 Hb_003434_060 Hb_000956_030--Hb_003434_060 Hb_000120_500 Hb_000120_500 Hb_000956_030--Hb_000120_500 Hb_002097_090 Hb_002097_090 Hb_000956_030--Hb_002097_090 Hb_000236_370 Hb_000236_370 Hb_000956_030--Hb_000236_370 Hb_000567_010 Hb_000567_010 Hb_000768_110--Hb_000567_010 Hb_008159_020 Hb_008159_020 Hb_000768_110--Hb_008159_020 Hb_000160_040 Hb_000160_040 Hb_000768_110--Hb_000160_040 Hb_010193_050 Hb_010193_050 Hb_000768_110--Hb_010193_050 Hb_005914_060 Hb_005914_060 Hb_000768_110--Hb_005914_060 Hb_000173_510 Hb_000173_510 Hb_000768_110--Hb_000173_510 Hb_010931_080 Hb_010931_080 Hb_004370_030--Hb_010931_080 Hb_006252_040 Hb_006252_040 Hb_004370_030--Hb_006252_040 Hb_004370_030--Hb_026099_010 Hb_004370_030--Hb_002942_160 Hb_004370_030--Hb_000768_110 Hb_020719_030 Hb_020719_030 Hb_002272_180--Hb_020719_030 Hb_000364_060 Hb_000364_060 Hb_002272_180--Hb_000364_060 Hb_002067_040 Hb_002067_040 Hb_002272_180--Hb_002067_040 Hb_012490_030 Hb_012490_030 Hb_002272_180--Hb_012490_030 Hb_033834_060 Hb_033834_060 Hb_002272_180--Hb_033834_060 Hb_021409_170 Hb_021409_170 Hb_001221_040--Hb_021409_170 Hb_001221_040--Hb_026099_010 Hb_002675_060 Hb_002675_060 Hb_001221_040--Hb_002675_060 Hb_024990_010 Hb_024990_010 Hb_001221_040--Hb_024990_010 Hb_000046_440 Hb_000046_440 Hb_001221_040--Hb_000046_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1215 11.0578 8.02039 10.7574 24.0051 35.7171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0343 11.2245 9.79215 14.6781 6.07449

CAGE analysis