Hb_004450_020

Information

Type -
Description -
Location Contig4450: 28186-35789
Sequence    

Annotation

kegg
ID rcu:RCOM_0466780
description serine-threonine protein kinase, putative
nr
ID XP_002528052.1
description serine-threonine protein kinase, putative [Ricinus communis]
swissprot
ID Q86HG9
description Probable serine/threonine-protein kinase DDB_G0271682 OS=Dictyostelium discoideum GN=DDB_G0271682 PE=3 SV=2
trembl
ID B9SPY3
description Serine-threonine protein kinase, putative OS=Ricinus communis GN=RCOM_0466780 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase ctr1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004450_020 0.0 - - serine-threonine protein kinase, putative [Ricinus communis]
2 Hb_000012_350 0.1122350987 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
3 Hb_001638_340 0.1196453714 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001794_040 0.1227092212 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
5 Hb_011574_020 0.1234500124 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
6 Hb_002518_220 0.1244950784 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
7 Hb_000749_290 0.1272036686 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
8 Hb_020738_010 0.1288409669 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
9 Hb_000617_330 0.1288485398 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
10 Hb_039946_060 0.1297271216 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
11 Hb_000996_070 0.1304386136 - - unnamed protein product [Vitis vinifera]
12 Hb_000077_280 0.1320059317 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_008895_020 0.1327598686 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
14 Hb_143629_120 0.1345909552 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
15 Hb_124677_090 0.1356199403 - - conserved hypothetical protein [Ricinus communis]
16 Hb_059275_010 0.139515494 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
17 Hb_000827_020 0.1396569053 - - unnamed protein product [Coffea canephora]
18 Hb_000849_030 0.1397896781 - - PREDICTED: fimbrin-2 [Jatropha curcas]
19 Hb_000441_130 0.1403963073 - - PREDICTED: homeobox-leucine zipper protein HOX32 [Vitis vinifera]
20 Hb_003266_090 0.1420247877 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004450_020 Hb_004450_020 Hb_000012_350 Hb_000012_350 Hb_004450_020--Hb_000012_350 Hb_001638_340 Hb_001638_340 Hb_004450_020--Hb_001638_340 Hb_001794_040 Hb_001794_040 Hb_004450_020--Hb_001794_040 Hb_011574_020 Hb_011574_020 Hb_004450_020--Hb_011574_020 Hb_002518_220 Hb_002518_220 Hb_004450_020--Hb_002518_220 Hb_000749_290 Hb_000749_290 Hb_004450_020--Hb_000749_290 Hb_000012_350--Hb_001794_040 Hb_000012_350--Hb_011574_020 Hb_010164_030 Hb_010164_030 Hb_000012_350--Hb_010164_030 Hb_020738_010 Hb_020738_010 Hb_000012_350--Hb_020738_010 Hb_001427_100 Hb_001427_100 Hb_000012_350--Hb_001427_100 Hb_000827_020 Hb_000827_020 Hb_000012_350--Hb_000827_020 Hb_001638_340--Hb_011574_020 Hb_008895_020 Hb_008895_020 Hb_001638_340--Hb_008895_020 Hb_124677_090 Hb_124677_090 Hb_001638_340--Hb_124677_090 Hb_001477_060 Hb_001477_060 Hb_001638_340--Hb_001477_060 Hb_001638_340--Hb_000012_350 Hb_059275_010 Hb_059275_010 Hb_001638_340--Hb_059275_010 Hb_001117_050 Hb_001117_050 Hb_001794_040--Hb_001117_050 Hb_001794_040--Hb_020738_010 Hb_017383_010 Hb_017383_010 Hb_001794_040--Hb_017383_010 Hb_000032_420 Hb_000032_420 Hb_001794_040--Hb_000032_420 Hb_010449_010 Hb_010449_010 Hb_001794_040--Hb_010449_010 Hb_011574_020--Hb_020738_010 Hb_011574_020--Hb_059275_010 Hb_011574_020--Hb_008895_020 Hb_011574_020--Hb_001794_040 Hb_000742_130 Hb_000742_130 Hb_002518_220--Hb_000742_130 Hb_003266_090 Hb_003266_090 Hb_002518_220--Hb_003266_090 Hb_003581_050 Hb_003581_050 Hb_002518_220--Hb_003581_050 Hb_043630_030 Hb_043630_030 Hb_002518_220--Hb_043630_030 Hb_006120_210 Hb_006120_210 Hb_002518_220--Hb_006120_210 Hb_012539_100 Hb_012539_100 Hb_002518_220--Hb_012539_100 Hb_000077_280 Hb_000077_280 Hb_000749_290--Hb_000077_280 Hb_039946_060 Hb_039946_060 Hb_000749_290--Hb_039946_060 Hb_000749_290--Hb_011574_020 Hb_024714_110 Hb_024714_110 Hb_000749_290--Hb_024714_110 Hb_000749_290--Hb_008895_020 Hb_000193_180 Hb_000193_180 Hb_000749_290--Hb_000193_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0155546 0.255645 0.555742 0.909471 0.0155893 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0354767 0 0 0.0334744 0.348595

CAGE analysis