Hb_004450_050

Information

Type -
Description -
Location Contig4450: 56329-59487
Sequence    

Annotation

kegg
ID pop:POPTR_0005s14990g
description ASF1-like anti-silencing family protein
nr
ID XP_011021322.1
description PREDICTED: histone chaperone ASF1B [Populus euphratica]
swissprot
ID Q9LS09
description Histone chaperone ASF1B OS=Arabidopsis thaliana GN=ASF1B PE=1 SV=1
trembl
ID U5GIA8
description ASF1-like anti-silencing family protein OS=Populus trichocarpa GN=POPTR_0005s14990g PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone chaperone asf1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42944: 59371-59494
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004450_050 0.0 - - PREDICTED: histone chaperone ASF1B [Populus euphratica]
2 Hb_001396_110 0.1164550658 - - DNA primase large subunit, putative [Ricinus communis]
3 Hb_009627_030 0.1208431924 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
4 Hb_000815_240 0.1231565352 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
5 Hb_005146_080 0.126554126 - - PREDICTED: uncharacterized protein LOC105636704 isoform X2 [Jatropha curcas]
6 Hb_005188_030 0.1400916911 - - amino acid transporter, putative [Ricinus communis]
7 Hb_006441_020 0.1409960884 - - PREDICTED: cadmium/zinc-transporting ATPase HMA3-like isoform X2 [Populus euphratica]
8 Hb_000395_040 0.1411735297 - - PREDICTED: uncharacterized protein LOC105645576 [Jatropha curcas]
9 Hb_000329_230 0.1416487826 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
10 Hb_000538_240 0.1441118406 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
11 Hb_084490_010 0.1443573246 - - PREDICTED: protein root UVB sensitive 6 isoform X2 [Jatropha curcas]
12 Hb_000953_130 0.1456660055 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
13 Hb_006643_020 0.1474816083 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
14 Hb_013057_020 0.1485773151 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
15 Hb_007017_040 0.1491353083 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
16 Hb_146081_010 0.1518264281 - - PREDICTED: protein SCAI [Jatropha curcas]
17 Hb_007926_050 0.1533548017 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
18 Hb_006198_020 0.1557478528 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
19 Hb_023344_150 0.1557623939 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
20 Hb_021443_090 0.156771456 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_004450_050 Hb_004450_050 Hb_001396_110 Hb_001396_110 Hb_004450_050--Hb_001396_110 Hb_009627_030 Hb_009627_030 Hb_004450_050--Hb_009627_030 Hb_000815_240 Hb_000815_240 Hb_004450_050--Hb_000815_240 Hb_005146_080 Hb_005146_080 Hb_004450_050--Hb_005146_080 Hb_005188_030 Hb_005188_030 Hb_004450_050--Hb_005188_030 Hb_006441_020 Hb_006441_020 Hb_004450_050--Hb_006441_020 Hb_006643_020 Hb_006643_020 Hb_001396_110--Hb_006643_020 Hb_187679_010 Hb_187679_010 Hb_001396_110--Hb_187679_010 Hb_008226_060 Hb_008226_060 Hb_001396_110--Hb_008226_060 Hb_000357_110 Hb_000357_110 Hb_001396_110--Hb_000357_110 Hb_085972_010 Hb_085972_010 Hb_001396_110--Hb_085972_010 Hb_006922_010 Hb_006922_010 Hb_009627_030--Hb_006922_010 Hb_005207_050 Hb_005207_050 Hb_009627_030--Hb_005207_050 Hb_003906_200 Hb_003906_200 Hb_009627_030--Hb_003906_200 Hb_007017_040 Hb_007017_040 Hb_009627_030--Hb_007017_040 Hb_010381_030 Hb_010381_030 Hb_009627_030--Hb_010381_030 Hb_001205_200 Hb_001205_200 Hb_009627_030--Hb_001205_200 Hb_000390_250 Hb_000390_250 Hb_000815_240--Hb_000390_250 Hb_000991_040 Hb_000991_040 Hb_000815_240--Hb_000991_040 Hb_005015_080 Hb_005015_080 Hb_000815_240--Hb_005015_080 Hb_000329_230 Hb_000329_230 Hb_000815_240--Hb_000329_230 Hb_000395_040 Hb_000395_040 Hb_000815_240--Hb_000395_040 Hb_084490_010 Hb_084490_010 Hb_000815_240--Hb_084490_010 Hb_171900_020 Hb_171900_020 Hb_005146_080--Hb_171900_020 Hb_001235_170 Hb_001235_170 Hb_005146_080--Hb_001235_170 Hb_005146_080--Hb_006643_020 Hb_014068_050 Hb_014068_050 Hb_005146_080--Hb_014068_050 Hb_000170_240 Hb_000170_240 Hb_005146_080--Hb_000170_240 Hb_007409_040 Hb_007409_040 Hb_005188_030--Hb_007409_040 Hb_003078_020 Hb_003078_020 Hb_005188_030--Hb_003078_020 Hb_000931_020 Hb_000931_020 Hb_005188_030--Hb_000931_020 Hb_000802_090 Hb_000802_090 Hb_005188_030--Hb_000802_090 Hb_005188_030--Hb_000815_240 Hb_005188_030--Hb_006441_020 Hb_013057_020 Hb_013057_020 Hb_006441_020--Hb_013057_020 Hb_006922_050 Hb_006922_050 Hb_006441_020--Hb_006922_050 Hb_002307_270 Hb_002307_270 Hb_006441_020--Hb_002307_270 Hb_017387_010 Hb_017387_010 Hb_006441_020--Hb_017387_010 Hb_002915_060 Hb_002915_060 Hb_006441_020--Hb_002915_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.96447 5.45095 2.53179 7.4197 1.45592 2.29599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25528 3.94597 3.00862 2.90352 0.950863

CAGE analysis