Hb_004450_090

Information

Type -
Description -
Location Contig4450: 88886-91854
Sequence    

Annotation

kegg
ID rcu:RCOM_0466970
description TRANSPARENT TESTA 12 protein, putative
nr
ID XP_002528061.1
description TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
swissprot
ID Q8GXM8
description MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1
trembl
ID B9SPZ2
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0466970 PE=3 SV=1
Gene Ontology
ID GO:0016021
description transparent testa 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42951: 91510-92019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004450_090 0.0 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
2 Hb_000983_130 0.0705330686 - - transcription factor, putative [Ricinus communis]
3 Hb_002534_070 0.0809660997 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
4 Hb_061783_010 0.0836639618 - - PREDICTED: uncharacterized protein LOC105124983 isoform X4 [Populus euphratica]
5 Hb_004102_200 0.0844256756 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
6 Hb_029238_040 0.0938205484 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
7 Hb_000000_260 0.0942267916 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
8 Hb_002960_030 0.0946823055 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
9 Hb_029791_010 0.1014673575 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
10 Hb_180980_010 0.1017902243 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
11 Hb_007545_220 0.1047732987 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
12 Hb_080601_010 0.1066249779 - - metallothionein 3-like protein [Hevea brasiliensis]
13 Hb_007579_030 0.1083354676 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_008948_010 0.1112995647 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
15 Hb_003582_030 0.1116675231 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
16 Hb_152914_010 0.1130756168 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
17 Hb_011985_020 0.1158707582 - - PREDICTED: phospholipase A1-Igamma3, chloroplastic [Jatropha curcas]
18 Hb_017700_030 0.1159463765 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
19 Hb_000197_260 0.1162912502 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
20 Hb_003023_030 0.1177099459 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_004450_090 Hb_004450_090 Hb_000983_130 Hb_000983_130 Hb_004450_090--Hb_000983_130 Hb_002534_070 Hb_002534_070 Hb_004450_090--Hb_002534_070 Hb_061783_010 Hb_061783_010 Hb_004450_090--Hb_061783_010 Hb_004102_200 Hb_004102_200 Hb_004450_090--Hb_004102_200 Hb_029238_040 Hb_029238_040 Hb_004450_090--Hb_029238_040 Hb_000000_260 Hb_000000_260 Hb_004450_090--Hb_000000_260 Hb_000983_130--Hb_004102_200 Hb_000983_130--Hb_029238_040 Hb_002960_030 Hb_002960_030 Hb_000983_130--Hb_002960_030 Hb_152277_010 Hb_152277_010 Hb_000983_130--Hb_152277_010 Hb_000983_130--Hb_000000_260 Hb_003023_030 Hb_003023_030 Hb_002534_070--Hb_003023_030 Hb_002534_070--Hb_002960_030 Hb_103225_030 Hb_103225_030 Hb_002534_070--Hb_103225_030 Hb_000646_040 Hb_000646_040 Hb_002534_070--Hb_000646_040 Hb_080601_010 Hb_080601_010 Hb_002534_070--Hb_080601_010 Hb_061783_010--Hb_004102_200 Hb_061783_010--Hb_029238_040 Hb_007545_220 Hb_007545_220 Hb_061783_010--Hb_007545_220 Hb_156850_050 Hb_156850_050 Hb_061783_010--Hb_156850_050 Hb_000984_110 Hb_000984_110 Hb_061783_010--Hb_000984_110 Hb_004102_200--Hb_029238_040 Hb_004102_200--Hb_152277_010 Hb_004102_200--Hb_156850_050 Hb_029238_040--Hb_156850_050 Hb_001401_120 Hb_001401_120 Hb_029238_040--Hb_001401_120 Hb_007579_030 Hb_007579_030 Hb_029238_040--Hb_007579_030 Hb_000317_170 Hb_000317_170 Hb_000000_260--Hb_000317_170 Hb_029791_010 Hb_029791_010 Hb_000000_260--Hb_029791_010 Hb_001680_050 Hb_001680_050 Hb_000000_260--Hb_001680_050 Hb_000000_260--Hb_007579_030 Hb_152914_010 Hb_152914_010 Hb_000000_260--Hb_152914_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.240574 0.0779793 0.627407 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0103874 0.217154

CAGE analysis