Hb_004452_010

Information

Type -
Description -
Location Contig4452: 4663-6873
Sequence    

Annotation

kegg
ID rcu:RCOM_0553930
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012079040.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
swissprot
ID Q0WN01
description Pentatricopeptide repeat-containing protein At3g58590 OS=Arabidopsis thaliana GN=At3g58590 PE=2 SV=2
trembl
ID A0A067K6D9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12237 PE=4 SV=1
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein at3g58590

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42954: 5384-5641 , PASA_asmbl_42955: 6075-6287
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004452_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
2 Hb_001956_200 0.0733648352 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
3 Hb_001266_060 0.0790898198 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Jatropha curcas]
4 Hb_002636_050 0.0850136179 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930 [Jatropha curcas]
5 Hb_002678_020 0.0882699433 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Jatropha curcas]
6 Hb_008500_010 0.0911553069 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
7 Hb_000427_050 0.0916375107 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_001507_020 0.0950532706 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
9 Hb_001226_020 0.0958632004 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Jatropha curcas]
10 Hb_006316_040 0.096366648 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
11 Hb_000007_150 0.0967555998 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
12 Hb_000577_010 0.0984891888 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
13 Hb_002311_040 0.0986029972 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
14 Hb_001975_160 0.0994525207 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000805_020 0.0994827209 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
16 Hb_001584_150 0.0997897392 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
17 Hb_031042_020 0.1017298618 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460 [Jatropha curcas]
18 Hb_034585_060 0.1017589777 - - PREDICTED: pentatricopeptide repeat-containing protein At3g50420 [Jatropha curcas]
19 Hb_001269_550 0.1023045617 - - hypothetical protein POPTR_0001s03510g [Populus trichocarpa]
20 Hb_000776_110 0.1025194044 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_004452_010 Hb_004452_010 Hb_001956_200 Hb_001956_200 Hb_004452_010--Hb_001956_200 Hb_001266_060 Hb_001266_060 Hb_004452_010--Hb_001266_060 Hb_002636_050 Hb_002636_050 Hb_004452_010--Hb_002636_050 Hb_002678_020 Hb_002678_020 Hb_004452_010--Hb_002678_020 Hb_008500_010 Hb_008500_010 Hb_004452_010--Hb_008500_010 Hb_000427_050 Hb_000427_050 Hb_004452_010--Hb_000427_050 Hb_001956_200--Hb_001266_060 Hb_001956_200--Hb_008500_010 Hb_001584_150 Hb_001584_150 Hb_001956_200--Hb_001584_150 Hb_000049_310 Hb_000049_310 Hb_001956_200--Hb_000049_310 Hb_031042_020 Hb_031042_020 Hb_001956_200--Hb_031042_020 Hb_001226_020 Hb_001226_020 Hb_001266_060--Hb_001226_020 Hb_001266_060--Hb_000427_050 Hb_001266_060--Hb_031042_020 Hb_003687_100 Hb_003687_100 Hb_001266_060--Hb_003687_100 Hb_001437_180 Hb_001437_180 Hb_002636_050--Hb_001437_180 Hb_002636_050--Hb_008500_010 Hb_001700_040 Hb_001700_040 Hb_002636_050--Hb_001700_040 Hb_009486_200 Hb_009486_200 Hb_002636_050--Hb_009486_200 Hb_002636_050--Hb_001584_150 Hb_001507_020 Hb_001507_020 Hb_002678_020--Hb_001507_020 Hb_007483_100 Hb_007483_100 Hb_002678_020--Hb_007483_100 Hb_002678_020--Hb_000427_050 Hb_000204_210 Hb_000204_210 Hb_002678_020--Hb_000204_210 Hb_000000_250 Hb_000000_250 Hb_002678_020--Hb_000000_250 Hb_002311_040 Hb_002311_040 Hb_002678_020--Hb_002311_040 Hb_006316_040 Hb_006316_040 Hb_008500_010--Hb_006316_040 Hb_008500_010--Hb_001584_150 Hb_012656_030 Hb_012656_030 Hb_008500_010--Hb_012656_030 Hb_004724_060 Hb_004724_060 Hb_008500_010--Hb_004724_060 Hb_015807_070 Hb_015807_070 Hb_008500_010--Hb_015807_070 Hb_008500_010--Hb_002311_040 Hb_001159_100 Hb_001159_100 Hb_000427_050--Hb_001159_100 Hb_029584_130 Hb_029584_130 Hb_000427_050--Hb_029584_130 Hb_000007_150 Hb_000007_150 Hb_000427_050--Hb_000007_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.3201 1.38006 0.437942 0.524457 1.3299 2.21716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.888969 1.63745 2.65969 1.54817 0.741202

CAGE analysis