Hb_004452_070

Information

Type transcription factor
Description TF Family: TCP
Location Contig4452: 74772-76040
Sequence    

Annotation

kegg
ID rcu:RCOM_0554080
description transcription factor, putative
nr
ID XP_002525139.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q8LPR5
description Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=1 SV=1
trembl
ID B9SGM0
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0554080 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor tcp4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42956: 73964-75053 , PASA_asmbl_42957: 76010-76606
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004452_070 0.0 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
2 Hb_003186_030 0.0430921053 transcription factor TF Family: MYB hypothetical protein POPTR_0012s05720g [Populus trichocarpa]
3 Hb_000251_150 0.0455377866 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
4 Hb_006132_080 0.0544634881 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
5 Hb_001936_100 0.0549788509 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001049_130 0.0550832064 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
7 Hb_000703_340 0.0560227415 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
8 Hb_001053_070 0.0560818604 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
9 Hb_000987_030 0.0579981495 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
10 Hb_005743_050 0.0588928202 - - unnamed protein product [Coffea canephora]
11 Hb_002534_020 0.0594371341 - - PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Gossypium raimondii]
12 Hb_000979_120 0.0601210582 - - Pectinesterase-1 precursor, putative [Ricinus communis]
13 Hb_013405_110 0.0612967971 - - multidrug resistance pump, putative [Ricinus communis]
14 Hb_031862_220 0.0615152018 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
15 Hb_004899_190 0.061700953 - - RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor [Populus x jackii]
16 Hb_000179_010 0.0628803893 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
17 Hb_002400_200 0.066888676 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
18 Hb_001348_160 0.0677794215 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
19 Hb_000373_210 0.0678542304 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
20 Hb_000139_170 0.0696915257 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]

Gene co-expression network

sample Hb_004452_070 Hb_004452_070 Hb_003186_030 Hb_003186_030 Hb_004452_070--Hb_003186_030 Hb_000251_150 Hb_000251_150 Hb_004452_070--Hb_000251_150 Hb_006132_080 Hb_006132_080 Hb_004452_070--Hb_006132_080 Hb_001936_100 Hb_001936_100 Hb_004452_070--Hb_001936_100 Hb_001049_130 Hb_001049_130 Hb_004452_070--Hb_001049_130 Hb_000703_340 Hb_000703_340 Hb_004452_070--Hb_000703_340 Hb_003186_030--Hb_000251_150 Hb_003186_030--Hb_006132_080 Hb_001191_060 Hb_001191_060 Hb_003186_030--Hb_001191_060 Hb_003033_020 Hb_003033_020 Hb_003186_030--Hb_003033_020 Hb_001348_160 Hb_001348_160 Hb_003186_030--Hb_001348_160 Hb_000987_030 Hb_000987_030 Hb_000251_150--Hb_000987_030 Hb_000046_400 Hb_000046_400 Hb_000251_150--Hb_000046_400 Hb_005743_050 Hb_005743_050 Hb_000251_150--Hb_005743_050 Hb_029879_020 Hb_029879_020 Hb_000251_150--Hb_029879_020 Hb_000179_010 Hb_000179_010 Hb_000251_150--Hb_000179_010 Hb_002121_050 Hb_002121_050 Hb_006132_080--Hb_002121_050 Hb_006132_080--Hb_000251_150 Hb_006132_080--Hb_000179_010 Hb_011724_040 Hb_011724_040 Hb_006132_080--Hb_011724_040 Hb_002400_200 Hb_002400_200 Hb_001936_100--Hb_002400_200 Hb_001053_070 Hb_001053_070 Hb_001936_100--Hb_001053_070 Hb_001936_100--Hb_001049_130 Hb_001936_100--Hb_000703_340 Hb_000373_210 Hb_000373_210 Hb_001936_100--Hb_000373_210 Hb_031862_220 Hb_031862_220 Hb_001936_100--Hb_031862_220 Hb_001049_130--Hb_001053_070 Hb_001049_130--Hb_031862_220 Hb_001049_130--Hb_000373_210 Hb_001049_130--Hb_000987_030 Hb_001049_130--Hb_002400_200 Hb_002014_150 Hb_002014_150 Hb_000703_340--Hb_002014_150 Hb_163566_020 Hb_163566_020 Hb_000703_340--Hb_163566_020 Hb_000703_340--Hb_002400_200 Hb_000139_170 Hb_000139_170 Hb_000703_340--Hb_000139_170 Hb_000703_340--Hb_005743_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0166315 0.0414033 3.7293 2.09925 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0119497 8.11987

CAGE analysis