Hb_004452_090

Information

Type -
Description -
Location Contig4452: 89157-94261
Sequence    

Annotation

kegg
ID rcu:RCOM_0554210
description calcium ion binding protein, putative
nr
ID KDP31770.1
description hypothetical protein JCGZ_12231 [Jatropha curcas]
swissprot
ID Q9M2K6
description PLASMODESMATA CALLOSE-BINDING PROTEIN 5 OS=Arabidopsis thaliana GN=PDCB5 PE=1 SV=2
trembl
ID A0A067KHQ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12231 PE=4 SV=1
Gene Ontology
ID GO:0016021
description sodium calcium exchanger family protein calcium-binding ef hand family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42958: 88871-89166
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004452_090 0.0 - - hypothetical protein JCGZ_12231 [Jatropha curcas]
2 Hb_008173_060 0.1425869018 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
3 Hb_005701_110 0.1585835704 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
4 Hb_000236_480 0.1598120065 - - PREDICTED: cytochrome P450 CYP72A219-like [Jatropha curcas]
5 Hb_001155_050 0.1728343561 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
6 Hb_002217_190 0.1761346074 - - invertase [Hevea brasiliensis]
7 Hb_001040_060 0.1772150652 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
8 Hb_004046_060 0.1779818685 - - PREDICTED: protein CDI [Jatropha curcas]
9 Hb_001318_150 0.1787460952 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
10 Hb_000529_040 0.181634722 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
11 Hb_143813_020 0.1854909569 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
12 Hb_006951_030 0.1876929331 - - PREDICTED: protein MCM10 homolog [Jatropha curcas]
13 Hb_004155_020 0.1887817174 transcription factor TF Family: MYB myb, putative [Ricinus communis]
14 Hb_002540_070 0.189134892 - - PREDICTED: protein cornichon homolog 1 [Jatropha curcas]
15 Hb_006289_020 0.1892465043 - - PREDICTED: shugoshin-1 isoform X1 [Jatropha curcas]
16 Hb_000563_440 0.1903432265 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
17 Hb_000010_300 0.1951323789 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
18 Hb_004970_070 0.1970821086 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
19 Hb_002518_200 0.1975572085 - - Proliferating cell nuclear antigen [Theobroma cacao]
20 Hb_000088_240 0.197912229 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004452_090 Hb_004452_090 Hb_008173_060 Hb_008173_060 Hb_004452_090--Hb_008173_060 Hb_005701_110 Hb_005701_110 Hb_004452_090--Hb_005701_110 Hb_000236_480 Hb_000236_480 Hb_004452_090--Hb_000236_480 Hb_001155_050 Hb_001155_050 Hb_004452_090--Hb_001155_050 Hb_002217_190 Hb_002217_190 Hb_004452_090--Hb_002217_190 Hb_001040_060 Hb_001040_060 Hb_004452_090--Hb_001040_060 Hb_008173_060--Hb_002217_190 Hb_000134_030 Hb_000134_030 Hb_008173_060--Hb_000134_030 Hb_176472_020 Hb_176472_020 Hb_008173_060--Hb_176472_020 Hb_007545_110 Hb_007545_110 Hb_008173_060--Hb_007545_110 Hb_012545_030 Hb_012545_030 Hb_008173_060--Hb_012545_030 Hb_005701_110--Hb_012545_030 Hb_005701_110--Hb_001155_050 Hb_000984_260 Hb_000984_260 Hb_005701_110--Hb_000984_260 Hb_006120_150 Hb_006120_150 Hb_005701_110--Hb_006120_150 Hb_015778_040 Hb_015778_040 Hb_005701_110--Hb_015778_040 Hb_008768_020 Hb_008768_020 Hb_005701_110--Hb_008768_020 Hb_006289_020 Hb_006289_020 Hb_000236_480--Hb_006289_020 Hb_000031_300 Hb_000031_300 Hb_000236_480--Hb_000031_300 Hb_001541_190 Hb_001541_190 Hb_000236_480--Hb_001541_190 Hb_006060_010 Hb_006060_010 Hb_000236_480--Hb_006060_010 Hb_000020_080 Hb_000020_080 Hb_000236_480--Hb_000020_080 Hb_011671_340 Hb_011671_340 Hb_001155_050--Hb_011671_340 Hb_001155_050--Hb_015778_040 Hb_007426_220 Hb_007426_220 Hb_001155_050--Hb_007426_220 Hb_000818_120 Hb_000818_120 Hb_001155_050--Hb_000818_120 Hb_000589_170 Hb_000589_170 Hb_001155_050--Hb_000589_170 Hb_029253_010 Hb_029253_010 Hb_001155_050--Hb_029253_010 Hb_001519_060 Hb_001519_060 Hb_002217_190--Hb_001519_060 Hb_002217_190--Hb_000818_120 Hb_001627_010 Hb_001627_010 Hb_002217_190--Hb_001627_010 Hb_002217_190--Hb_176472_020 Hb_001198_080 Hb_001198_080 Hb_002217_190--Hb_001198_080 Hb_014361_170 Hb_014361_170 Hb_001040_060--Hb_014361_170 Hb_001040_060--Hb_001627_010 Hb_004970_070 Hb_004970_070 Hb_001040_060--Hb_004970_070 Hb_004679_040 Hb_004679_040 Hb_001040_060--Hb_004679_040 Hb_001040_060--Hb_002217_190 Hb_000567_330 Hb_000567_330 Hb_001040_060--Hb_000567_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.100881 0.349346 0.960502 0.47781 0.00756769 0.0141375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0183538 0.144422 0.137559 0.240935 0.0920213

CAGE analysis