Hb_004452_100

Information

Type -
Description -
Location Contig4452: 96321-98543
Sequence    

Annotation

kegg
ID rcu:RCOM_0554220
description hypothetical protein
nr
ID XP_012079035.1
description PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SGM4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0554220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42960: 96202-99003
cDNA
(Sanger)
(ID:Location)		 015_H16.ab1: 96202-96683 , 032_O16.ab1: 96240-96869

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004452_100 0.0 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
2 Hb_002798_040 0.0478544349 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
3 Hb_001366_040 0.0695627356 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
4 Hb_011318_010 0.0706270502 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
5 Hb_000244_250 0.0708432381 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
6 Hb_002039_010 0.0709240817 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
7 Hb_000184_110 0.0711379715 - - hypothetical protein F383_18769 [Gossypium arboreum]
8 Hb_007586_030 0.0755298588 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
9 Hb_000005_380 0.0769306581 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
10 Hb_000915_050 0.0774117248 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004055_040 0.0776169222 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
12 Hb_000184_130 0.079227689 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
13 Hb_001871_040 0.0796389131 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
14 Hb_000977_180 0.0821421066 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
15 Hb_005977_090 0.0824661989 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
16 Hb_123777_030 0.0824782997 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
17 Hb_000661_050 0.0825102581 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
18 Hb_001017_040 0.0872563367 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
19 Hb_001943_010 0.0884101525 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
20 Hb_005396_130 0.0887633898 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_004452_100 Hb_004452_100 Hb_002798_040 Hb_002798_040 Hb_004452_100--Hb_002798_040 Hb_001366_040 Hb_001366_040 Hb_004452_100--Hb_001366_040 Hb_011318_010 Hb_011318_010 Hb_004452_100--Hb_011318_010 Hb_000244_250 Hb_000244_250 Hb_004452_100--Hb_000244_250 Hb_002039_010 Hb_002039_010 Hb_004452_100--Hb_002039_010 Hb_000184_110 Hb_000184_110 Hb_004452_100--Hb_000184_110 Hb_000100_070 Hb_000100_070 Hb_002798_040--Hb_000100_070 Hb_002798_040--Hb_001366_040 Hb_002798_040--Hb_000244_250 Hb_002798_040--Hb_011318_010 Hb_010931_080 Hb_010931_080 Hb_002798_040--Hb_010931_080 Hb_004055_040 Hb_004055_040 Hb_001366_040--Hb_004055_040 Hb_031754_010 Hb_031754_010 Hb_001366_040--Hb_031754_010 Hb_001504_160 Hb_001504_160 Hb_001366_040--Hb_001504_160 Hb_000327_310 Hb_000327_310 Hb_001366_040--Hb_000327_310 Hb_000005_380 Hb_000005_380 Hb_011318_010--Hb_000005_380 Hb_090804_010 Hb_090804_010 Hb_011318_010--Hb_090804_010 Hb_011318_010--Hb_000244_250 Hb_002054_040 Hb_002054_040 Hb_011318_010--Hb_002054_040 Hb_000244_250--Hb_000005_380 Hb_000915_050 Hb_000915_050 Hb_000244_250--Hb_000915_050 Hb_007586_030 Hb_007586_030 Hb_000244_250--Hb_007586_030 Hb_022408_010 Hb_022408_010 Hb_000244_250--Hb_022408_010 Hb_001541_020 Hb_001541_020 Hb_000244_250--Hb_001541_020 Hb_003362_040 Hb_003362_040 Hb_000244_250--Hb_003362_040 Hb_002890_340 Hb_002890_340 Hb_002039_010--Hb_002890_340 Hb_004204_020 Hb_004204_020 Hb_002039_010--Hb_004204_020 Hb_000152_820 Hb_000152_820 Hb_002039_010--Hb_000152_820 Hb_000184_130 Hb_000184_130 Hb_002039_010--Hb_000184_130 Hb_015306_020 Hb_015306_020 Hb_002039_010--Hb_015306_020 Hb_001017_040 Hb_001017_040 Hb_000184_110--Hb_001017_040 Hb_005396_130 Hb_005396_130 Hb_000184_110--Hb_005396_130 Hb_000729_050 Hb_000729_050 Hb_000184_110--Hb_000729_050 Hb_005662_030 Hb_005662_030 Hb_000184_110--Hb_005662_030 Hb_108216_040 Hb_108216_040 Hb_000184_110--Hb_108216_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
161.825 66.6994 16.3171 31.0464 135.881 178.96
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
96.9865 53.0836 107.634 68.6363 59.5898

CAGE analysis