Hb_004453_020

Information

Type -
Description -
Location Contig4453: 2571-3622
Sequence    

Annotation

kegg
ID mdm:103415651
description uncharacterized LOC103415651
nr
ID CBI20765.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID M4DVF9
description Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra020503 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004453_020 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000441_110 0.0878214961 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
3 Hb_004102_110 0.0940243813 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
4 Hb_002518_080 0.0975594552 - - PREDICTED: uncharacterized protein LOC105639837 [Jatropha curcas]
5 Hb_000667_070 0.0983105101 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
6 Hb_011671_100 0.1001647522 - - 60S ribosomal protein L15 [Populus trichocarpa]
7 Hb_026527_050 0.1011099492 - - PREDICTED: 39S ribosomal protein L47, mitochondrial-like isoform X1 [Populus euphratica]
8 Hb_015279_010 0.1026176198 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
9 Hb_003540_240 0.1040902943 - - PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]
10 Hb_001979_040 0.1044569507 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
11 Hb_000608_310 0.1045705741 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_001123_130 0.1061866278 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
13 Hb_004143_150 0.1062114072 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
14 Hb_000172_320 0.1065892301 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
15 Hb_011236_010 0.1079755981 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
16 Hb_000035_370 0.1083518704 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001245_100 0.1095238728 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
18 Hb_091433_020 0.1102982627 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
19 Hb_001484_070 0.1107597967 - - conserved hypothetical protein [Ricinus communis]
20 Hb_023278_020 0.1109928221 - - Peroxin 3 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_004453_020 Hb_004453_020 Hb_000441_110 Hb_000441_110 Hb_004453_020--Hb_000441_110 Hb_004102_110 Hb_004102_110 Hb_004453_020--Hb_004102_110 Hb_002518_080 Hb_002518_080 Hb_004453_020--Hb_002518_080 Hb_000667_070 Hb_000667_070 Hb_004453_020--Hb_000667_070 Hb_011671_100 Hb_011671_100 Hb_004453_020--Hb_011671_100 Hb_026527_050 Hb_026527_050 Hb_004453_020--Hb_026527_050 Hb_003540_240 Hb_003540_240 Hb_000441_110--Hb_003540_240 Hb_000441_110--Hb_011671_100 Hb_006478_150 Hb_006478_150 Hb_000441_110--Hb_006478_150 Hb_002056_050 Hb_002056_050 Hb_000441_110--Hb_002056_050 Hb_004567_120 Hb_004567_120 Hb_000441_110--Hb_004567_120 Hb_024439_010 Hb_024439_010 Hb_004102_110--Hb_024439_010 Hb_000016_160 Hb_000016_160 Hb_004102_110--Hb_000016_160 Hb_004143_150 Hb_004143_150 Hb_004102_110--Hb_004143_150 Hb_004102_110--Hb_026527_050 Hb_009615_070 Hb_009615_070 Hb_004102_110--Hb_009615_070 Hb_000527_060 Hb_000527_060 Hb_004102_110--Hb_000527_060 Hb_022425_040 Hb_022425_040 Hb_002518_080--Hb_022425_040 Hb_000127_180 Hb_000127_180 Hb_002518_080--Hb_000127_180 Hb_000217_030 Hb_000217_030 Hb_002518_080--Hb_000217_030 Hb_015279_010 Hb_015279_010 Hb_002518_080--Hb_015279_010 Hb_114893_030 Hb_114893_030 Hb_002518_080--Hb_114893_030 Hb_001504_110 Hb_001504_110 Hb_002518_080--Hb_001504_110 Hb_001245_100 Hb_001245_100 Hb_000667_070--Hb_001245_100 Hb_001123_130 Hb_001123_130 Hb_000667_070--Hb_001123_130 Hb_000656_240 Hb_000656_240 Hb_000667_070--Hb_000656_240 Hb_000667_070--Hb_015279_010 Hb_001133_120 Hb_001133_120 Hb_000667_070--Hb_001133_120 Hb_008554_060 Hb_008554_060 Hb_000667_070--Hb_008554_060 Hb_001691_140 Hb_001691_140 Hb_011671_100--Hb_001691_140 Hb_003787_010 Hb_003787_010 Hb_011671_100--Hb_003787_010 Hb_000172_320 Hb_000172_320 Hb_011671_100--Hb_000172_320 Hb_011671_100--Hb_015279_010 Hb_004767_080 Hb_004767_080 Hb_011671_100--Hb_004767_080 Hb_000417_360 Hb_000417_360 Hb_011671_100--Hb_000417_360 Hb_006198_070 Hb_006198_070 Hb_026527_050--Hb_006198_070 Hb_003052_190 Hb_003052_190 Hb_026527_050--Hb_003052_190 Hb_026527_050--Hb_000667_070 Hb_026527_050--Hb_003540_240 Hb_005496_140 Hb_005496_140 Hb_026527_050--Hb_005496_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.962884 0.840018 0.894726 0.846681 0.405644 1.20822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01735 3.04995 1.3621 1.05078 0.705642

CAGE analysis