Hb_004453_050

Information

Type -
Description -
Location Contig4453: 29886-30989
Sequence    

Annotation

kegg
ID rcu:RCOM_0924620
description hypothetical protein
nr
ID XP_012076624.1
description PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RP76
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0924620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004453_050 0.0 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
2 Hb_001633_210 0.0651888887 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
3 Hb_007416_320 0.0760448019 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000120_470 0.0816002442 - - hypothetical protein VITISV_017372 [Vitis vinifera]
5 Hb_000614_250 0.0821003904 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
6 Hb_008173_110 0.0836966879 - - DNA binding protein, putative [Ricinus communis]
7 Hb_001545_170 0.0855334697 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
8 Hb_001159_110 0.0864761837 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
9 Hb_000710_060 0.087610569 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
10 Hb_003349_090 0.0888248544 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
11 Hb_000866_220 0.0890754881 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
12 Hb_000189_560 0.0894036782 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
13 Hb_000250_060 0.0894621526 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
14 Hb_000175_540 0.0895511553 - - PREDICTED: uncharacterized protein LOC105634886 [Jatropha curcas]
15 Hb_000185_030 0.0903925769 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
16 Hb_011214_020 0.0925321049 - - PREDICTED: RNA-binding protein 5 isoform X1 [Jatropha curcas]
17 Hb_008770_030 0.0938591074 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
18 Hb_089032_030 0.094187024 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
19 Hb_010812_120 0.0947345761 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
20 Hb_004994_140 0.0957857313 - - PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004453_050 Hb_004453_050 Hb_001633_210 Hb_001633_210 Hb_004453_050--Hb_001633_210 Hb_007416_320 Hb_007416_320 Hb_004453_050--Hb_007416_320 Hb_000120_470 Hb_000120_470 Hb_004453_050--Hb_000120_470 Hb_000614_250 Hb_000614_250 Hb_004453_050--Hb_000614_250 Hb_008173_110 Hb_008173_110 Hb_004453_050--Hb_008173_110 Hb_001545_170 Hb_001545_170 Hb_004453_050--Hb_001545_170 Hb_000250_060 Hb_000250_060 Hb_001633_210--Hb_000250_060 Hb_000840_250 Hb_000840_250 Hb_001633_210--Hb_000840_250 Hb_010812_120 Hb_010812_120 Hb_001633_210--Hb_010812_120 Hb_001633_210--Hb_000614_250 Hb_000185_030 Hb_000185_030 Hb_001633_210--Hb_000185_030 Hb_000297_010 Hb_000297_010 Hb_001633_210--Hb_000297_010 Hb_005618_170 Hb_005618_170 Hb_007416_320--Hb_005618_170 Hb_007416_320--Hb_001633_210 Hb_000058_060 Hb_000058_060 Hb_007416_320--Hb_000058_060 Hb_000062_220 Hb_000062_220 Hb_007416_320--Hb_000062_220 Hb_000876_070 Hb_000876_070 Hb_007416_320--Hb_000876_070 Hb_007416_320--Hb_000120_470 Hb_001758_100 Hb_001758_100 Hb_000120_470--Hb_001758_100 Hb_008900_010 Hb_008900_010 Hb_000120_470--Hb_008900_010 Hb_005054_350 Hb_005054_350 Hb_000120_470--Hb_005054_350 Hb_058999_020 Hb_058999_020 Hb_000120_470--Hb_058999_020 Hb_000120_470--Hb_000058_060 Hb_000614_250--Hb_000840_250 Hb_001014_030 Hb_001014_030 Hb_000614_250--Hb_001014_030 Hb_002450_020 Hb_002450_020 Hb_000614_250--Hb_002450_020 Hb_000710_060 Hb_000710_060 Hb_000614_250--Hb_000710_060 Hb_003847_030 Hb_003847_030 Hb_000614_250--Hb_003847_030 Hb_001653_020 Hb_001653_020 Hb_008173_110--Hb_001653_020 Hb_003994_260 Hb_003994_260 Hb_008173_110--Hb_003994_260 Hb_000069_420 Hb_000069_420 Hb_008173_110--Hb_000069_420 Hb_000210_120 Hb_000210_120 Hb_008173_110--Hb_000210_120 Hb_029584_050 Hb_029584_050 Hb_008173_110--Hb_029584_050 Hb_012490_070 Hb_012490_070 Hb_001545_170--Hb_012490_070 Hb_089032_030 Hb_089032_030 Hb_001545_170--Hb_089032_030 Hb_000120_460 Hb_000120_460 Hb_001545_170--Hb_000120_460 Hb_003349_090 Hb_003349_090 Hb_001545_170--Hb_003349_090 Hb_001545_170--Hb_010812_120 Hb_002676_090 Hb_002676_090 Hb_001545_170--Hb_002676_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.905414 1.21778 0.548338 0.895209 0.498231 1.31062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.30365 1.97752 1.55702 1.26451 0.677428

CAGE analysis