Hb_004453_060

Information

Type -
Description -
Location Contig4453: 36454-37119
Sequence    

Annotation

kegg
ID rcu:RCOM_0924630
description protein with unknown function
nr
ID XP_012076622.1
description PREDICTED: zinc finger Ran-binding domain-containing protein 2 [Jatropha curcas]
swissprot
ID O13801
description Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.04c PE=1 SV=1
trembl
ID A0A067KBV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07198 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42970: 35981-37456
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004453_060 0.0 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2 [Jatropha curcas]
2 Hb_150573_010 0.0667662268 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
3 Hb_004732_070 0.1245204489 - - conserved hypothetical protein [Ricinus communis]
4 Hb_025194_070 0.1293010663 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
5 Hb_036029_020 0.1304438601 - - PREDICTED: patellin-3-like [Jatropha curcas]
6 Hb_107658_010 0.133275624 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X2 [Jatropha curcas]
7 Hb_003427_070 0.1350760951 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
8 Hb_000270_790 0.1380800094 - - hypothetical protein JCGZ_11498 [Jatropha curcas]
9 Hb_009070_010 0.1389627093 - - Spermidine synthase, putative [Ricinus communis]
10 Hb_000628_060 0.1413543236 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
11 Hb_000190_160 0.1425588551 - - PREDICTED: uncharacterized protein LOC105649940 isoform X2 [Jatropha curcas]
12 Hb_000227_300 0.1449441808 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003777_150 0.145690655 - - PREDICTED: uncharacterized protein LOC105640938 isoform X1 [Jatropha curcas]
14 Hb_084304_010 0.1460629692 - - PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]
15 Hb_023768_010 0.1462450406 - - -
16 Hb_000739_190 0.1476707043 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
17 Hb_000922_050 0.1488058209 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
18 Hb_002597_030 0.1523114267 - - -
19 Hb_000310_040 0.1536318559 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
20 Hb_001675_350 0.1548852278 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]

Gene co-expression network

sample Hb_004453_060 Hb_004453_060 Hb_150573_010 Hb_150573_010 Hb_004453_060--Hb_150573_010 Hb_004732_070 Hb_004732_070 Hb_004453_060--Hb_004732_070 Hb_025194_070 Hb_025194_070 Hb_004453_060--Hb_025194_070 Hb_036029_020 Hb_036029_020 Hb_004453_060--Hb_036029_020 Hb_107658_010 Hb_107658_010 Hb_004453_060--Hb_107658_010 Hb_003427_070 Hb_003427_070 Hb_004453_060--Hb_003427_070 Hb_009070_010 Hb_009070_010 Hb_150573_010--Hb_009070_010 Hb_150573_010--Hb_107658_010 Hb_000227_300 Hb_000227_300 Hb_150573_010--Hb_000227_300 Hb_051408_010 Hb_051408_010 Hb_150573_010--Hb_051408_010 Hb_000922_050 Hb_000922_050 Hb_150573_010--Hb_000922_050 Hb_000310_040 Hb_000310_040 Hb_004732_070--Hb_000310_040 Hb_000190_160 Hb_000190_160 Hb_004732_070--Hb_000190_160 Hb_039075_010 Hb_039075_010 Hb_004732_070--Hb_039075_010 Hb_003777_150 Hb_003777_150 Hb_004732_070--Hb_003777_150 Hb_000270_050 Hb_000270_050 Hb_004732_070--Hb_000270_050 Hb_030360_010 Hb_030360_010 Hb_004732_070--Hb_030360_010 Hb_025194_070--Hb_000922_050 Hb_005784_050 Hb_005784_050 Hb_025194_070--Hb_005784_050 Hb_025194_070--Hb_003427_070 Hb_023768_010 Hb_023768_010 Hb_025194_070--Hb_023768_010 Hb_084304_010 Hb_084304_010 Hb_025194_070--Hb_084304_010 Hb_071433_010 Hb_071433_010 Hb_036029_020--Hb_071433_010 Hb_001675_290 Hb_001675_290 Hb_036029_020--Hb_001675_290 Hb_007749_020 Hb_007749_020 Hb_036029_020--Hb_007749_020 Hb_000172_230 Hb_000172_230 Hb_036029_020--Hb_000172_230 Hb_002597_030 Hb_002597_030 Hb_036029_020--Hb_002597_030 Hb_004970_100 Hb_004970_100 Hb_036029_020--Hb_004970_100 Hb_000011_260 Hb_000011_260 Hb_107658_010--Hb_000011_260 Hb_001369_190 Hb_001369_190 Hb_107658_010--Hb_001369_190 Hb_107658_010--Hb_036029_020 Hb_107658_010--Hb_004732_070 Hb_003427_070--Hb_084304_010 Hb_000739_190 Hb_000739_190 Hb_003427_070--Hb_000739_190 Hb_003427_070--Hb_000922_050 Hb_003427_070--Hb_003777_150 Hb_000684_110 Hb_000684_110 Hb_003427_070--Hb_000684_110 Hb_003427_070--Hb_039075_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.811785 13.6701 21.7673 58.3341 0.867776 0.891003
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.349205 2.62595

CAGE analysis