Hb_004453_070

Information

Type transcription factor
Description TF Family: CPP
Location Contig4453: 41486-48406
Sequence    

Annotation

kegg
ID rcu:RCOM_0924640
description tso1, putative
nr
ID XP_012076620.1
description PREDICTED: CRC domain-containing protein TSO1-like isoform X1 [Jatropha curcas]
swissprot
ID F4JIF5
description Protein tesmin/TSO1-like CXC 2 OS=Arabidopsis thaliana GN=TCX2 PE=1 SV=1
trembl
ID A0A067KBM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07197 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42971: 42478-44810 , PASA_asmbl_42973: 45558-45989 , PASA_asmbl_42974: 46431-46944 , PASA_asmbl_42975: 47158-47687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004453_070 0.0 transcription factor TF Family: CPP PREDICTED: CRC domain-containing protein TSO1-like isoform X1 [Jatropha curcas]
2 Hb_001195_410 0.136391616 - - PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase [Jatropha curcas]
3 Hb_000796_020 0.1451924468 - - ADP-ribosylation factor [Phaseolus vulgaris]
4 Hb_006569_060 0.1457196811 - - plasma membrane intrinsic protein PIP2;3 [Hevea brasiliensis]
5 Hb_000776_060 0.1584714481 - - histone H4 [Zea mays]
6 Hb_012362_030 0.1586366471 - - PREDICTED: GPI-anchored protein LORELEI-like [Populus euphratica]
7 Hb_000062_090 0.1606837098 - - PREDICTED: uncharacterized protein LOC105644743 isoform X2 [Jatropha curcas]
8 Hb_012760_050 0.1607237864 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
9 Hb_002217_500 0.1655491676 - - hypothetical protein JCGZ_19014 [Jatropha curcas]
10 Hb_007926_050 0.1718226976 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
11 Hb_131684_010 0.1742675266 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001008_200 0.175048995 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC103961552 [Pyrus x bretschneideri]
13 Hb_000683_100 0.1753266281 - - hypothetical protein JCGZ_22137 [Jatropha curcas]
14 Hb_034299_070 0.1781828656 - - actin binding protein, putative [Ricinus communis]
15 Hb_118507_010 0.1798425925 - - hypothetical protein VITISV_019292 [Vitis vinifera]
16 Hb_012305_130 0.1803472606 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
17 Hb_000953_130 0.1803748842 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
18 Hb_000742_160 0.1818300557 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Jatropha curcas]
19 Hb_000483_400 0.1824914854 - - PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Jatropha curcas]
20 Hb_000407_070 0.1842845389 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004453_070 Hb_004453_070 Hb_001195_410 Hb_001195_410 Hb_004453_070--Hb_001195_410 Hb_000796_020 Hb_000796_020 Hb_004453_070--Hb_000796_020 Hb_006569_060 Hb_006569_060 Hb_004453_070--Hb_006569_060 Hb_000776_060 Hb_000776_060 Hb_004453_070--Hb_000776_060 Hb_012362_030 Hb_012362_030 Hb_004453_070--Hb_012362_030 Hb_000062_090 Hb_000062_090 Hb_004453_070--Hb_000062_090 Hb_118507_010 Hb_118507_010 Hb_001195_410--Hb_118507_010 Hb_000008_190 Hb_000008_190 Hb_001195_410--Hb_000008_190 Hb_012760_050 Hb_012760_050 Hb_001195_410--Hb_012760_050 Hb_000172_510 Hb_000172_510 Hb_001195_410--Hb_000172_510 Hb_001195_410--Hb_000776_060 Hb_000683_100 Hb_000683_100 Hb_000796_020--Hb_000683_100 Hb_000796_020--Hb_000776_060 Hb_030992_010 Hb_030992_010 Hb_000796_020--Hb_030992_010 Hb_122636_010 Hb_122636_010 Hb_000796_020--Hb_122636_010 Hb_000796_020--Hb_000062_090 Hb_001999_100 Hb_001999_100 Hb_006569_060--Hb_001999_100 Hb_019280_020 Hb_019280_020 Hb_006569_060--Hb_019280_020 Hb_006569_060--Hb_012362_030 Hb_001481_150 Hb_001481_150 Hb_006569_060--Hb_001481_150 Hb_002217_500 Hb_002217_500 Hb_006569_060--Hb_002217_500 Hb_000776_060--Hb_000062_090 Hb_000776_060--Hb_030992_010 Hb_000776_060--Hb_012760_050 Hb_006711_090 Hb_006711_090 Hb_000776_060--Hb_006711_090 Hb_012362_030--Hb_019280_020 Hb_000062_530 Hb_000062_530 Hb_012362_030--Hb_000062_530 Hb_012362_030--Hb_000062_090 Hb_029510_100 Hb_029510_100 Hb_012362_030--Hb_029510_100 Hb_147245_010 Hb_147245_010 Hb_012362_030--Hb_147245_010 Hb_012362_030--Hb_000008_190 Hb_000402_130 Hb_000402_130 Hb_000062_090--Hb_000402_130 Hb_048476_060 Hb_048476_060 Hb_000062_090--Hb_048476_060 Hb_000062_090--Hb_006711_090 Hb_004158_020 Hb_004158_020 Hb_000062_090--Hb_004158_020 Hb_000671_130 Hb_000671_130 Hb_000062_090--Hb_000671_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.958789 1.67429 1.53881 6.92275 0.347091 0.417905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.37123 1.46701 1.78407 0.913971 0.620166

CAGE analysis