Hb_004453_080

Information

Type -
Description -
Location Contig4453: 48678-54764
Sequence    

Annotation

kegg
ID pop:POPTR_0006s26730g
description POPTRDRAFT_819591; hypothetical protein
nr
ID XP_011026469.1
description PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
swissprot
ID O95372
description Acyl-protein thioesterase 2 OS=Homo sapiens GN=LYPLA2 PE=1 SV=1
trembl
ID B9HA25
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s26730g PE=4 SV=2
Gene Ontology
ID GO:0052689
description acyl-protein thioesterase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42976: 48803-54706 , PASA_asmbl_42977: 49114-54714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004453_080 0.0 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
2 Hb_007850_080 0.1103155773 - - PREDICTED: auxilin-like protein 1 isoform X1 [Jatropha curcas]
3 Hb_001433_110 0.1211654176 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
4 Hb_000252_110 0.127714181 - - -
5 Hb_028487_170 0.1332599455 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
6 Hb_003442_070 0.1369385106 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
7 Hb_008226_080 0.1407513852 - - Protein LRP16, putative [Ricinus communis]
8 Hb_000139_470 0.1459480255 - - Dual specificity protein phosphatase, putative [Ricinus communis]
9 Hb_000465_070 0.1459737111 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
10 Hb_000163_050 0.1468105293 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]
11 Hb_000031_260 0.1483746178 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
12 Hb_002631_180 0.1486486194 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
13 Hb_001171_050 0.1493061893 - - PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]
14 Hb_000041_240 0.1512318119 - - glutaredoxin [Hevea brasiliensis]
15 Hb_006538_090 0.1520793068 - - PREDICTED: IST1 homolog [Jatropha curcas]
16 Hb_003020_150 0.152124315 - - tropinone reductase, putative [Ricinus communis]
17 Hb_002374_380 0.1524655362 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
18 Hb_005656_100 0.1525750543 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002193_030 0.1557293827 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like [Jatropha curcas]
20 Hb_003038_140 0.1560442587 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]

Gene co-expression network

sample Hb_004453_080 Hb_004453_080 Hb_007850_080 Hb_007850_080 Hb_004453_080--Hb_007850_080 Hb_001433_110 Hb_001433_110 Hb_004453_080--Hb_001433_110 Hb_000252_110 Hb_000252_110 Hb_004453_080--Hb_000252_110 Hb_028487_170 Hb_028487_170 Hb_004453_080--Hb_028487_170 Hb_003442_070 Hb_003442_070 Hb_004453_080--Hb_003442_070 Hb_008226_080 Hb_008226_080 Hb_004453_080--Hb_008226_080 Hb_005656_100 Hb_005656_100 Hb_007850_080--Hb_005656_100 Hb_007850_080--Hb_003442_070 Hb_033642_080 Hb_033642_080 Hb_007850_080--Hb_033642_080 Hb_007850_080--Hb_008226_080 Hb_002631_180 Hb_002631_180 Hb_007850_080--Hb_002631_180 Hb_002374_380 Hb_002374_380 Hb_001433_110--Hb_002374_380 Hb_001221_570 Hb_001221_570 Hb_001433_110--Hb_001221_570 Hb_001433_110--Hb_000252_110 Hb_001433_110--Hb_028487_170 Hb_001059_120 Hb_001059_120 Hb_001433_110--Hb_001059_120 Hb_000252_110--Hb_005656_100 Hb_000041_240 Hb_000041_240 Hb_000252_110--Hb_000041_240 Hb_004931_100 Hb_004931_100 Hb_000252_110--Hb_004931_100 Hb_001171_050 Hb_001171_050 Hb_000252_110--Hb_001171_050 Hb_005285_030 Hb_005285_030 Hb_028487_170--Hb_005285_030 Hb_000286_060 Hb_000286_060 Hb_028487_170--Hb_000286_060 Hb_000300_430 Hb_000300_430 Hb_028487_170--Hb_000300_430 Hb_001123_160 Hb_001123_160 Hb_028487_170--Hb_001123_160 Hb_000700_040 Hb_000700_040 Hb_028487_170--Hb_000700_040 Hb_003442_070--Hb_005285_030 Hb_001341_100 Hb_001341_100 Hb_003442_070--Hb_001341_100 Hb_001486_030 Hb_001486_030 Hb_003442_070--Hb_001486_030 Hb_165669_010 Hb_165669_010 Hb_003442_070--Hb_165669_010 Hb_008173_110 Hb_008173_110 Hb_003442_070--Hb_008173_110 Hb_002016_080 Hb_002016_080 Hb_008226_080--Hb_002016_080 Hb_007192_100 Hb_007192_100 Hb_008226_080--Hb_007192_100 Hb_000413_280 Hb_000413_280 Hb_008226_080--Hb_000413_280 Hb_061195_020 Hb_061195_020 Hb_008226_080--Hb_061195_020 Hb_000922_040 Hb_000922_040 Hb_008226_080--Hb_000922_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.57157 9.49684 7.74717 9.10675 1.38298 2.2426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9241 20.0235 8.72418 17.7308 10.5368

CAGE analysis