Hb_004453_110

Information

Type -
Description -
Location Contig4453: 69793-77020
Sequence    

Annotation

kegg
ID cam:101509078
description serine/arginine repetitive matrix protein 2-like
nr
ID XP_007013817.1
description Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
swissprot
ID Q8RWY7
description Peptidyl-prolyl cis-trans isomerase CYP95 OS=Arabidopsis thaliana GN=CYP95 PE=1 SV=2
trembl
ID G7I6E7
description Peptidyl-prolyl cis-trans isomerase OS=Medicago truncatula GN=MTR_1g011980 PE=4 SV=2
Gene Ontology
ID GO:0003755
description peptidyl-prolyl cis-trans isomerase cyp95-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42978: 69918-71643 , PASA_asmbl_42979: 71855-74282 , PASA_asmbl_42980: 76240-76594
cDNA
(Sanger)
(ID:Location)		 022_D12.ab1: 69918-70022 , 040_G09.ab1: 69918-70028

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004453_110 0.0 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
2 Hb_000429_220 0.0380684088 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
3 Hb_005731_090 0.0545959206 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
4 Hb_089140_050 0.0551063435 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
5 Hb_002174_020 0.0567487633 - - ring finger protein, putative [Ricinus communis]
6 Hb_008112_030 0.0569464147 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000896_080 0.0598400767 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Vitis vinifera]
8 Hb_002422_050 0.061894836 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
9 Hb_000261_030 0.0628210823 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
10 Hb_002329_040 0.0635066786 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
11 Hb_027380_140 0.0641718464 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
12 Hb_007635_030 0.0648831146 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
13 Hb_009175_020 0.0668529299 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
14 Hb_000671_070 0.0686984961 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
15 Hb_001417_050 0.0688430489 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
16 Hb_000914_120 0.0714648357 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
17 Hb_000960_050 0.0722423649 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
18 Hb_000740_100 0.0723059188 - - calpain, putative [Ricinus communis]
19 Hb_148909_030 0.0730072402 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
20 Hb_006882_020 0.073031646 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004453_110 Hb_004453_110 Hb_000429_220 Hb_000429_220 Hb_004453_110--Hb_000429_220 Hb_005731_090 Hb_005731_090 Hb_004453_110--Hb_005731_090 Hb_089140_050 Hb_089140_050 Hb_004453_110--Hb_089140_050 Hb_002174_020 Hb_002174_020 Hb_004453_110--Hb_002174_020 Hb_008112_030 Hb_008112_030 Hb_004453_110--Hb_008112_030 Hb_000896_080 Hb_000896_080 Hb_004453_110--Hb_000896_080 Hb_009175_020 Hb_009175_020 Hb_000429_220--Hb_009175_020 Hb_000429_220--Hb_089140_050 Hb_009503_030 Hb_009503_030 Hb_000429_220--Hb_009503_030 Hb_027380_140 Hb_027380_140 Hb_000429_220--Hb_027380_140 Hb_002823_030 Hb_002823_030 Hb_000429_220--Hb_002823_030 Hb_005731_090--Hb_002174_020 Hb_005731_090--Hb_008112_030 Hb_067193_010 Hb_067193_010 Hb_005731_090--Hb_067193_010 Hb_000160_290 Hb_000160_290 Hb_005731_090--Hb_000160_290 Hb_030627_060 Hb_030627_060 Hb_005731_090--Hb_030627_060 Hb_000671_070 Hb_000671_070 Hb_089140_050--Hb_000671_070 Hb_000261_030 Hb_000261_030 Hb_089140_050--Hb_000261_030 Hb_011344_020 Hb_011344_020 Hb_089140_050--Hb_011344_020 Hb_000035_410 Hb_000035_410 Hb_089140_050--Hb_000035_410 Hb_002174_020--Hb_008112_030 Hb_001454_280 Hb_001454_280 Hb_002174_020--Hb_001454_280 Hb_006252_020 Hb_006252_020 Hb_002174_020--Hb_006252_020 Hb_002174_020--Hb_000160_290 Hb_007635_030 Hb_007635_030 Hb_002174_020--Hb_007635_030 Hb_008112_030--Hb_007635_030 Hb_000960_050 Hb_000960_050 Hb_008112_030--Hb_000960_050 Hb_008112_030--Hb_006252_020 Hb_000896_080--Hb_005731_090 Hb_000406_230 Hb_000406_230 Hb_000896_080--Hb_000406_230 Hb_000264_030 Hb_000264_030 Hb_000896_080--Hb_000264_030 Hb_000896_080--Hb_008112_030 Hb_000896_080--Hb_000960_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.8418 34.5487 20.3789 23.4254 47.8292 40.8828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.1877 17.4894 16.3016 26.6687 29.7836

CAGE analysis