Hb_004453_120

Information

Type -
Description -
Location Contig4453: 79051-80824
Sequence    

Annotation

kegg
ID rcu:RCOM_0924880
description ammonium transporter, putative
nr
ID XP_002515551.1
description ammonium transporter, putative [Ricinus communis]
swissprot
ID Q84KJ6
description Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1
trembl
ID B9RP82
description Ammonium transporter OS=Ricinus communis GN=RCOM_0924880 PE=3 SV=1
Gene Ontology
ID GO:0016021
description ammonium transporter 3 member 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004453_120 0.0 - - ammonium transporter, putative [Ricinus communis]
2 Hb_157680_010 0.0028714911 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
3 Hb_158575_010 0.0034708308 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003882_030 0.0180853317 - - putative retrotransposon protein [Phyllostachys edulis]
5 Hb_002874_250 0.022859046 - - -
6 Hb_000010_230 0.0246206123 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
7 Hb_176140_010 0.0279330234 - - polyprotein [Oryza australiensis]
8 Hb_001779_050 0.0288556365 - - polyprotein [Ananas comosus]
9 Hb_001338_010 0.0413710505 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
10 Hb_000031_070 0.0461168546 - - Thioredoxin domain-containing protein, putative [Ricinus communis]
11 Hb_184398_010 0.0743402198 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
12 Hb_001681_010 0.078096208 - - PREDICTED: cytochrome P450 81E8-like isoform X1 [Populus euphratica]
13 Hb_003477_020 0.0817559243 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
14 Hb_001081_070 0.0854032836 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
15 Hb_004138_020 0.0926693879 - - PREDICTED: cucumisin-like [Populus euphratica]
16 Hb_004466_080 0.0969452864 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
17 Hb_151061_040 0.0985659983 - - putative retrotransposon protein [Phyllostachys edulis]
18 Hb_005087_020 0.107053084 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
19 Hb_025654_010 0.1107006229 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
20 Hb_011540_050 0.1121986059 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_004453_120 Hb_004453_120 Hb_157680_010 Hb_157680_010 Hb_004453_120--Hb_157680_010 Hb_158575_010 Hb_158575_010 Hb_004453_120--Hb_158575_010 Hb_003882_030 Hb_003882_030 Hb_004453_120--Hb_003882_030 Hb_002874_250 Hb_002874_250 Hb_004453_120--Hb_002874_250 Hb_000010_230 Hb_000010_230 Hb_004453_120--Hb_000010_230 Hb_176140_010 Hb_176140_010 Hb_004453_120--Hb_176140_010 Hb_157680_010--Hb_158575_010 Hb_157680_010--Hb_003882_030 Hb_157680_010--Hb_176140_010 Hb_157680_010--Hb_002874_250 Hb_001779_050 Hb_001779_050 Hb_157680_010--Hb_001779_050 Hb_158575_010--Hb_003882_030 Hb_158575_010--Hb_176140_010 Hb_158575_010--Hb_001779_050 Hb_158575_010--Hb_002874_250 Hb_003882_030--Hb_002874_250 Hb_003882_030--Hb_000010_230 Hb_003882_030--Hb_176140_010 Hb_002874_250--Hb_000010_230 Hb_002874_250--Hb_176140_010 Hb_000010_230--Hb_157680_010 Hb_000010_230--Hb_158575_010 Hb_184398_010 Hb_184398_010 Hb_000010_230--Hb_184398_010 Hb_176140_010--Hb_001779_050 Hb_001338_010 Hb_001338_010 Hb_176140_010--Hb_001338_010 Hb_000031_070 Hb_000031_070 Hb_176140_010--Hb_000031_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0223805 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.262824

CAGE analysis