Hb_004453_170

Information

Type -
Description -
Location Contig4453: 109845-112957
Sequence    

Annotation

kegg
ID pop:POPTR_0006s26610g
description POPTRDRAFT_813950; putative ubiquinol-cytochrome c reductase family protein
nr
ID XP_006371731.1
description hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
swissprot
ID F4JWS8
description Cytochrome b-c1 complex subunit 7-2 OS=Arabidopsis thaliana GN=QCR7-2 PE=1 SV=1
trembl
ID U5FF52
description Cytochrome b-c1 complex subunit 7 OS=Populus trichocarpa GN=POPTR_0018s01370g PE=3 SV=1
Gene Ontology
ID GO:0005750
description cytochrome b-c1 complex subunit 7-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42991: 109689-113033
cDNA
(Sanger)
(ID:Location)		 021_J04.ab1: 109775-113029 , 042_E12.ab1: 109832-112986 , 045_H17.ab1: 109746-113031 , 053_B15.ab1: 109689-112989

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004453_170 0.0 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
2 Hb_001832_060 0.067387384 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
3 Hb_001195_480 0.0679486447 - - cop9 complex subunit, putative [Ricinus communis]
4 Hb_000462_130 0.0718872697 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
5 Hb_000260_550 0.0735069981 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
6 Hb_001123_130 0.0766056947 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000527_060 0.0795102594 - - Protein C20orf11, putative [Ricinus communis]
8 Hb_165132_010 0.0798544948 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
9 Hb_134949_020 0.0802668208 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
10 Hb_002811_260 0.0813225294 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
11 Hb_002768_030 0.0814252369 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
12 Hb_001662_070 0.0815762685 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
13 Hb_010560_020 0.0821403568 - - PREDICTED: uncharacterized protein LOC105649267 [Jatropha curcas]
14 Hb_000656_240 0.082819307 - - proteasome subunit alpha type, putative [Ricinus communis]
15 Hb_012286_030 0.0834187939 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
16 Hb_004116_190 0.083684219 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
17 Hb_000236_390 0.0844463207 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
18 Hb_030736_080 0.0845656352 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001504_110 0.0849510668 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
20 Hb_002995_020 0.0861098656 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004453_170 Hb_004453_170 Hb_001832_060 Hb_001832_060 Hb_004453_170--Hb_001832_060 Hb_001195_480 Hb_001195_480 Hb_004453_170--Hb_001195_480 Hb_000462_130 Hb_000462_130 Hb_004453_170--Hb_000462_130 Hb_000260_550 Hb_000260_550 Hb_004453_170--Hb_000260_550 Hb_001123_130 Hb_001123_130 Hb_004453_170--Hb_001123_130 Hb_000527_060 Hb_000527_060 Hb_004453_170--Hb_000527_060 Hb_000698_030 Hb_000698_030 Hb_001832_060--Hb_000698_030 Hb_000127_180 Hb_000127_180 Hb_001832_060--Hb_000127_180 Hb_004116_190 Hb_004116_190 Hb_001832_060--Hb_004116_190 Hb_001047_230 Hb_001047_230 Hb_001832_060--Hb_001047_230 Hb_001269_630 Hb_001269_630 Hb_001832_060--Hb_001269_630 Hb_001534_120 Hb_001534_120 Hb_001195_480--Hb_001534_120 Hb_000656_240 Hb_000656_240 Hb_001195_480--Hb_000656_240 Hb_000815_320 Hb_000815_320 Hb_001195_480--Hb_000815_320 Hb_000529_030 Hb_000529_030 Hb_001195_480--Hb_000529_030 Hb_004096_090 Hb_004096_090 Hb_001195_480--Hb_004096_090 Hb_001534_050 Hb_001534_050 Hb_000462_130--Hb_001534_050 Hb_000462_130--Hb_001832_060 Hb_028995_040 Hb_028995_040 Hb_000462_130--Hb_028995_040 Hb_000462_130--Hb_000698_030 Hb_003078_040 Hb_003078_040 Hb_000462_130--Hb_003078_040 Hb_000096_170 Hb_000096_170 Hb_000260_550--Hb_000096_170 Hb_007044_130 Hb_007044_130 Hb_000260_550--Hb_007044_130 Hb_000260_550--Hb_000127_180 Hb_002518_080 Hb_002518_080 Hb_000260_550--Hb_002518_080 Hb_124953_020 Hb_124953_020 Hb_000260_550--Hb_124953_020 Hb_001123_130--Hb_000527_060 Hb_000261_140 Hb_000261_140 Hb_001123_130--Hb_000261_140 Hb_000667_070 Hb_000667_070 Hb_001123_130--Hb_000667_070 Hb_002995_020 Hb_002995_020 Hb_001123_130--Hb_002995_020 Hb_001123_130--Hb_000656_240 Hb_001484_070 Hb_001484_070 Hb_001123_130--Hb_001484_070 Hb_012286_030 Hb_012286_030 Hb_000527_060--Hb_012286_030 Hb_000527_060--Hb_000261_140 Hb_000115_220 Hb_000115_220 Hb_000527_060--Hb_000115_220 Hb_004143_150 Hb_004143_150 Hb_000527_060--Hb_004143_150 Hb_000920_110 Hb_000920_110 Hb_000527_060--Hb_000920_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
478.5 289.908 521.755 316.306 355.818 376.42
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
638.157 959.862 461.901 215.38 157.907

CAGE analysis