Hb_004459_050

Information

Type -
Description -
Location Contig4459: 40001-42694
Sequence    

Annotation

kegg
ID rcu:RCOM_1014620
description hypothetical protein
nr
ID XP_002522557.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8VY22
description Protein trichome birefringence-like 38 OS=Arabidopsis thaliana GN=TBL38 PE=2 SV=1
trembl
ID B9S988
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1014620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43001: 39999-42701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004459_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006133_010 0.0630370314 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
3 Hb_002659_050 0.0873691664 - - PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
4 Hb_043935_010 0.0929611086 - - Receptor protein kinase-like protein [Medicago truncatula]
5 Hb_015807_020 0.0943957549 - - gibberellin 20-oxidase, putative [Ricinus communis]
6 Hb_010381_080 0.0984938121 - - cytochrome P450, putative [Ricinus communis]
7 Hb_080791_010 0.0990325654 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
8 Hb_004807_040 0.0995952742 - - PREDICTED: uncharacterized protein LOC104420559 [Eucalyptus grandis]
9 Hb_001579_050 0.1040045814 - - alcohol dehydrogenase, putative [Ricinus communis]
10 Hb_015817_010 0.1053400499 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
11 Hb_001289_050 0.1055317472 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
12 Hb_000199_090 0.1062978119 - - Tetrapyrrole-binding family protein [Populus trichocarpa]
13 Hb_000026_060 0.1069525657 - - beta-1,3-glucanase [Manihot esculenta]
14 Hb_005348_050 0.1081239783 - - beta-galactosidase, putative [Ricinus communis]
15 Hb_003171_040 0.1108387502 - - multidrug resistance pump, putative [Ricinus communis]
16 Hb_052139_010 0.1141806714 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
17 Hb_000223_090 0.1145162499 - - Blue copper protein precursor, putative [Ricinus communis]
18 Hb_004242_200 0.1148533519 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
19 Hb_001856_290 0.1194798887 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
20 Hb_054865_040 0.1197146635 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]

Gene co-expression network

sample Hb_004459_050 Hb_004459_050 Hb_006133_010 Hb_006133_010 Hb_004459_050--Hb_006133_010 Hb_002659_050 Hb_002659_050 Hb_004459_050--Hb_002659_050 Hb_043935_010 Hb_043935_010 Hb_004459_050--Hb_043935_010 Hb_015807_020 Hb_015807_020 Hb_004459_050--Hb_015807_020 Hb_010381_080 Hb_010381_080 Hb_004459_050--Hb_010381_080 Hb_080791_010 Hb_080791_010 Hb_004459_050--Hb_080791_010 Hb_004807_040 Hb_004807_040 Hb_006133_010--Hb_004807_040 Hb_006133_010--Hb_002659_050 Hb_101097_010 Hb_101097_010 Hb_006133_010--Hb_101097_010 Hb_001289_050 Hb_001289_050 Hb_006133_010--Hb_001289_050 Hb_000270_040 Hb_000270_040 Hb_006133_010--Hb_000270_040 Hb_000589_410 Hb_000589_410 Hb_002659_050--Hb_000589_410 Hb_005348_050 Hb_005348_050 Hb_002659_050--Hb_005348_050 Hb_002659_050--Hb_043935_010 Hb_008948_130 Hb_008948_130 Hb_002659_050--Hb_008948_130 Hb_015817_010 Hb_015817_010 Hb_043935_010--Hb_015817_010 Hb_004392_030 Hb_004392_030 Hb_043935_010--Hb_004392_030 Hb_006147_020 Hb_006147_020 Hb_043935_010--Hb_006147_020 Hb_012539_080 Hb_012539_080 Hb_043935_010--Hb_012539_080 Hb_043935_010--Hb_010381_080 Hb_001579_050 Hb_001579_050 Hb_015807_020--Hb_001579_050 Hb_000858_050 Hb_000858_050 Hb_015807_020--Hb_000858_050 Hb_015807_020--Hb_001289_050 Hb_077151_010 Hb_077151_010 Hb_015807_020--Hb_077151_010 Hb_000282_100 Hb_000282_100 Hb_015807_020--Hb_000282_100 Hb_004242_200 Hb_004242_200 Hb_010381_080--Hb_004242_200 Hb_114893_010 Hb_114893_010 Hb_010381_080--Hb_114893_010 Hb_010381_080--Hb_006147_020 Hb_001300_240 Hb_001300_240 Hb_010381_080--Hb_001300_240 Hb_000026_060 Hb_000026_060 Hb_080791_010--Hb_000026_060 Hb_080791_010--Hb_015817_010 Hb_080791_010--Hb_006147_020 Hb_002041_020 Hb_002041_020 Hb_080791_010--Hb_002041_020 Hb_080791_010--Hb_043935_010 Hb_080791_010--Hb_000858_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0353517 0.717184 47.7535 35.4558 0.0331207 0.0555702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0317551 0.0590857 15.2129 231.976

CAGE analysis