Hb_004460_010

Information

Type -
Description -
Location Contig4460: 7743-13694
Sequence    

Annotation

kegg
ID pmum:103334263
description SKI/DACH domain-containing protein 1-like
nr
ID XP_012085442.1
description PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LDK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15158 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43021: 7301-8264 , PASA_asmbl_43022: 8487-13598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004460_010 0.0 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
2 Hb_013818_060 0.1856070768 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
3 Hb_001799_080 0.2065169504 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
4 Hb_000120_120 0.209974945 - - PREDICTED: phosphoinositide phospholipase C 2 [Jatropha curcas]
5 Hb_011360_080 0.2181817929 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
6 Hb_003599_070 0.2184036672 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000477_080 0.2266372479 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
8 Hb_001277_090 0.2273747073 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
9 Hb_000094_130 0.2320231603 - - PREDICTED: random slug protein 5 [Jatropha curcas]
10 Hb_023732_040 0.234171335 - - cytochrome P450, putative [Ricinus communis]
11 Hb_001268_400 0.2372292089 - - PREDICTED: uncharacterized protein LOC104583970 [Brachypodium distachyon]
12 Hb_001035_070 0.2373003616 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
13 Hb_152439_020 0.2433762214 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
14 Hb_006280_010 0.2459786805 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
15 Hb_004871_050 0.2528949095 - - hypothetical protein F383_22684 [Gossypium arboreum]
16 Hb_002498_060 0.2536011359 - - ATP binding protein, putative [Ricinus communis]
17 Hb_000479_130 0.2553222089 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Jatropha curcas]
18 Hb_001617_020 0.2560811443 - - multidrug resistance pump, putative [Ricinus communis]
19 Hb_004429_070 0.2588689913 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
20 Hb_000172_560 0.2646095833 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Jatropha curcas]

Gene co-expression network

sample Hb_004460_010 Hb_004460_010 Hb_013818_060 Hb_013818_060 Hb_004460_010--Hb_013818_060 Hb_001799_080 Hb_001799_080 Hb_004460_010--Hb_001799_080 Hb_000120_120 Hb_000120_120 Hb_004460_010--Hb_000120_120 Hb_011360_080 Hb_011360_080 Hb_004460_010--Hb_011360_080 Hb_003599_070 Hb_003599_070 Hb_004460_010--Hb_003599_070 Hb_000477_080 Hb_000477_080 Hb_004460_010--Hb_000477_080 Hb_013818_060--Hb_000120_120 Hb_000249_130 Hb_000249_130 Hb_013818_060--Hb_000249_130 Hb_000249_090 Hb_000249_090 Hb_013818_060--Hb_000249_090 Hb_027892_010 Hb_027892_010 Hb_013818_060--Hb_027892_010 Hb_000120_650 Hb_000120_650 Hb_013818_060--Hb_000120_650 Hb_143629_090 Hb_143629_090 Hb_013818_060--Hb_143629_090 Hb_001799_080--Hb_000120_120 Hb_000637_120 Hb_000637_120 Hb_001799_080--Hb_000637_120 Hb_001799_080--Hb_013818_060 Hb_020096_020 Hb_020096_020 Hb_001799_080--Hb_020096_020 Hb_008014_070 Hb_008014_070 Hb_001799_080--Hb_008014_070 Hb_000120_120--Hb_027892_010 Hb_000120_120--Hb_000249_130 Hb_000120_120--Hb_000120_650 Hb_004871_050 Hb_004871_050 Hb_000120_120--Hb_004871_050 Hb_000120_120--Hb_000249_090 Hb_011360_080--Hb_000477_080 Hb_004429_070 Hb_004429_070 Hb_011360_080--Hb_004429_070 Hb_002290_040 Hb_002290_040 Hb_011360_080--Hb_002290_040 Hb_000368_060 Hb_000368_060 Hb_011360_080--Hb_000368_060 Hb_000141_030 Hb_000141_030 Hb_011360_080--Hb_000141_030 Hb_002756_020 Hb_002756_020 Hb_011360_080--Hb_002756_020 Hb_003599_070--Hb_000141_030 Hb_003599_070--Hb_000368_060 Hb_000972_010 Hb_000972_010 Hb_003599_070--Hb_000972_010 Hb_000103_110 Hb_000103_110 Hb_003599_070--Hb_000103_110 Hb_000784_040 Hb_000784_040 Hb_003599_070--Hb_000784_040 Hb_000172_570 Hb_000172_570 Hb_003599_070--Hb_000172_570 Hb_000477_080--Hb_000141_030 Hb_000477_080--Hb_000368_060 Hb_000477_080--Hb_004429_070 Hb_000562_040 Hb_000562_040 Hb_000477_080--Hb_000562_040 Hb_000477_080--Hb_000103_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.3967 0.992115 0.409677 0.608139 3.66129 0.831259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.61496 3.08354 26.3426 1.17657 1.65022

CAGE analysis