Hb_004460_020

Information

Type -
Description -
Location Contig4460: 18565-19748
Sequence    

Annotation

kegg
ID rcu:RCOM_1417050
description chaperone protein DNAj, putative
nr
ID XP_002531089.1
description chaperone protein DNAj, putative [Ricinus communis]
swissprot
ID Q9SDN0
description Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=1 SV=2
trembl
ID B9SYM0
description Chaperone protein DNAj, putative OS=Ricinus communis GN=RCOM_1417050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43023: 18570-19501
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004460_020 0.0 - - chaperone protein DNAj, putative [Ricinus communis]
2 Hb_001767_020 0.1522373928 - - PREDICTED: WAT1-related protein At1g68170-like, partial [Jatropha curcas]
3 Hb_004102_130 0.1557609141 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000038_150 0.1590408707 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
5 Hb_001159_210 0.168799716 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
6 Hb_008147_030 0.1812766175 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
7 Hb_001268_230 0.1828171868 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
8 Hb_001146_070 0.1829351096 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
9 Hb_045502_010 0.1855673853 - - prefoldin subunit 1 [Jatropha curcas]
10 Hb_003673_020 0.1859055888 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
11 Hb_005568_070 0.1859442645 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
12 Hb_000175_530 0.1866487458 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
13 Hb_000211_080 0.1907208209 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
14 Hb_031862_170 0.1916233925 - - immunophilin, putative [Ricinus communis]
15 Hb_172256_010 0.1933712033 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_001775_040 0.1941567133 - - -
17 Hb_001668_030 0.1961038471 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003226_170 0.1968272689 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
19 Hb_003540_140 0.1981709838 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
20 Hb_000016_180 0.1987962848 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]

Gene co-expression network

sample Hb_004460_020 Hb_004460_020 Hb_001767_020 Hb_001767_020 Hb_004460_020--Hb_001767_020 Hb_004102_130 Hb_004102_130 Hb_004460_020--Hb_004102_130 Hb_000038_150 Hb_000038_150 Hb_004460_020--Hb_000038_150 Hb_001159_210 Hb_001159_210 Hb_004460_020--Hb_001159_210 Hb_008147_030 Hb_008147_030 Hb_004460_020--Hb_008147_030 Hb_001268_230 Hb_001268_230 Hb_004460_020--Hb_001268_230 Hb_041774_010 Hb_041774_010 Hb_001767_020--Hb_041774_010 Hb_005867_080 Hb_005867_080 Hb_001767_020--Hb_005867_080 Hb_001668_030 Hb_001668_030 Hb_001767_020--Hb_001668_030 Hb_001775_040 Hb_001775_040 Hb_001767_020--Hb_001775_040 Hb_001767_020--Hb_008147_030 Hb_172256_010 Hb_172256_010 Hb_004102_130--Hb_172256_010 Hb_000016_180 Hb_000016_180 Hb_004102_130--Hb_000016_180 Hb_003673_020 Hb_003673_020 Hb_004102_130--Hb_003673_020 Hb_000211_080 Hb_000211_080 Hb_004102_130--Hb_000211_080 Hb_004531_090 Hb_004531_090 Hb_004102_130--Hb_004531_090 Hb_000176_170 Hb_000176_170 Hb_004102_130--Hb_000176_170 Hb_045502_010 Hb_045502_010 Hb_000038_150--Hb_045502_010 Hb_000038_150--Hb_001159_210 Hb_134732_010 Hb_134732_010 Hb_000038_150--Hb_134732_010 Hb_035360_010 Hb_035360_010 Hb_000038_150--Hb_035360_010 Hb_000619_070 Hb_000619_070 Hb_000038_150--Hb_000619_070 Hb_002326_060 Hb_002326_060 Hb_001159_210--Hb_002326_060 Hb_001159_210--Hb_134732_010 Hb_047661_010 Hb_047661_010 Hb_001159_210--Hb_047661_010 Hb_003320_030 Hb_003320_030 Hb_001159_210--Hb_003320_030 Hb_000548_010 Hb_000548_010 Hb_008147_030--Hb_000548_010 Hb_008147_030--Hb_001268_230 Hb_141838_010 Hb_141838_010 Hb_008147_030--Hb_141838_010 Hb_008147_030--Hb_003320_030 Hb_031862_170 Hb_031862_170 Hb_008147_030--Hb_031862_170 Hb_004648_040 Hb_004648_040 Hb_001268_230--Hb_004648_040 Hb_098315_110 Hb_098315_110 Hb_001268_230--Hb_098315_110 Hb_000317_080 Hb_000317_080 Hb_001268_230--Hb_000317_080 Hb_001628_110 Hb_001628_110 Hb_001268_230--Hb_001628_110 Hb_053543_010 Hb_053543_010 Hb_001268_230--Hb_053543_010 Hb_000300_530 Hb_000300_530 Hb_001268_230--Hb_000300_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.695 1.08367 0.883375 2.63948 61.535 53.912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.85714 3.56546 8.66189 6.22849 0.437437

CAGE analysis