Hb_004460_050

Information

Type -
Description -
Location Contig4460: 82080-88129
Sequence    

Annotation

kegg
ID rcu:RCOM_1417160
description chaperone protein DNAj, putative
nr
ID XP_002531090.1
description chaperone protein DNAj, putative [Ricinus communis]
swissprot
ID B0JW23
description Chaperone protein DnaJ OS=Microcystis aeruginosa (strain NIES-843) GN=dnaJ PE=3 SV=1
trembl
ID B9SYM1
description Chaperone protein DNAj, putative OS=Ricinus communis GN=RCOM_1417160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43024: 82127-82924
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004460_050 0.0 - - chaperone protein DNAj, putative [Ricinus communis]
2 Hb_000868_100 0.1886924729 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
3 Hb_000160_240 0.2318567306 - - PREDICTED: uncharacterized protein At1g66480 [Jatropha curcas]
4 Hb_000260_290 0.2319828507 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
5 Hb_000694_060 0.2336320895 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
6 Hb_031527_060 0.2342093041 - - glutamate decarboxylase, putative [Ricinus communis]
7 Hb_001117_070 0.237802019 - - 30S ribosomal protein S19, putative [Ricinus communis]
8 Hb_105328_030 0.2453653754 - - Putative retroelement [Oryza sativa Japonica Group]
9 Hb_011077_020 0.2512379578 - - kinase, putative [Ricinus communis]
10 Hb_001183_010 0.2525259321 - - -
11 Hb_002374_380 0.2530999827 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
12 Hb_000671_170 0.253121673 - - kinase, putative [Ricinus communis]
13 Hb_001720_060 0.2540919527 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
14 Hb_031862_040 0.2543665409 - - purine transporter, putative [Ricinus communis]
15 Hb_001504_120 0.2547114035 - - -
16 Hb_007017_010 0.2563331837 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
17 Hb_000796_250 0.2569428699 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
18 Hb_000948_080 0.2575877526 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
19 Hb_000402_210 0.2580998258 - - hypothetical protein EUGRSUZ_B032971, partial [Eucalyptus grandis]
20 Hb_000451_070 0.2586449885 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]

Gene co-expression network

sample Hb_004460_050 Hb_004460_050 Hb_000868_100 Hb_000868_100 Hb_004460_050--Hb_000868_100 Hb_000160_240 Hb_000160_240 Hb_004460_050--Hb_000160_240 Hb_000260_290 Hb_000260_290 Hb_004460_050--Hb_000260_290 Hb_000694_060 Hb_000694_060 Hb_004460_050--Hb_000694_060 Hb_031527_060 Hb_031527_060 Hb_004460_050--Hb_031527_060 Hb_001117_070 Hb_001117_070 Hb_004460_050--Hb_001117_070 Hb_000671_170 Hb_000671_170 Hb_000868_100--Hb_000671_170 Hb_000868_100--Hb_000694_060 Hb_000671_160 Hb_000671_160 Hb_000868_100--Hb_000671_160 Hb_008173_030 Hb_008173_030 Hb_000868_100--Hb_008173_030 Hb_000049_240 Hb_000049_240 Hb_000868_100--Hb_000049_240 Hb_000976_290 Hb_000976_290 Hb_000160_240--Hb_000976_290 Hb_006026_010 Hb_006026_010 Hb_000160_240--Hb_006026_010 Hb_002273_080 Hb_002273_080 Hb_000160_240--Hb_002273_080 Hb_002686_280 Hb_002686_280 Hb_000160_240--Hb_002686_280 Hb_002273_050 Hb_002273_050 Hb_000160_240--Hb_002273_050 Hb_020805_170 Hb_020805_170 Hb_000160_240--Hb_020805_170 Hb_000796_250 Hb_000796_250 Hb_000260_290--Hb_000796_250 Hb_015690_020 Hb_015690_020 Hb_000260_290--Hb_015690_020 Hb_001433_180 Hb_001433_180 Hb_000260_290--Hb_001433_180 Hb_001565_110 Hb_001565_110 Hb_000260_290--Hb_001565_110 Hb_003052_220 Hb_003052_220 Hb_000260_290--Hb_003052_220 Hb_031862_040 Hb_031862_040 Hb_000260_290--Hb_031862_040 Hb_002374_380 Hb_002374_380 Hb_000694_060--Hb_002374_380 Hb_007017_010 Hb_007017_010 Hb_000694_060--Hb_007017_010 Hb_008948_120 Hb_008948_120 Hb_000694_060--Hb_008948_120 Hb_000948_080 Hb_000948_080 Hb_000694_060--Hb_000948_080 Hb_002236_050 Hb_002236_050 Hb_000694_060--Hb_002236_050 Hb_009545_020 Hb_009545_020 Hb_031527_060--Hb_009545_020 Hb_000645_210 Hb_000645_210 Hb_031527_060--Hb_000645_210 Hb_009736_010 Hb_009736_010 Hb_031527_060--Hb_009736_010 Hb_000928_040 Hb_000928_040 Hb_031527_060--Hb_000928_040 Hb_000300_130 Hb_000300_130 Hb_031527_060--Hb_000300_130 Hb_003120_040 Hb_003120_040 Hb_031527_060--Hb_003120_040 Hb_000243_140 Hb_000243_140 Hb_001117_070--Hb_000243_140 Hb_001117_070--Hb_000796_250 Hb_009510_040 Hb_009510_040 Hb_001117_070--Hb_009510_040 Hb_001902_190 Hb_001902_190 Hb_001117_070--Hb_001902_190 Hb_000640_300 Hb_000640_300 Hb_001117_070--Hb_000640_300 Hb_000432_040 Hb_000432_040 Hb_001117_070--Hb_000432_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.43289 77.4629 3.75459 5.6563 9.01421 3.43321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4129 82.0757 10.3636 76.0898 9.28189

CAGE analysis