Hb_004462_020

Information

Type -
Description -
Location Contig4462: 14172-22767
Sequence    

Annotation

kegg
ID vvi:100266656
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1
nr
ID XP_010650034.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
swissprot
ID Q9FLV4
description G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana GN=At5g24080 PE=2 SV=1
trembl
ID A0A067KVC5
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_02159 PE=3 SV=1
Gene Ontology
ID GO:0004672
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43028: 21197-21618
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004462_020 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
2 Hb_002217_070 0.1680739188 - - PREDICTED: uncharacterized protein LOC105643596 [Jatropha curcas]
3 Hb_002600_010 0.1730688773 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
4 Hb_000603_120 0.1803865941 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
5 Hb_001365_050 0.1862891461 - - hypothetical protein POPTR_0019s128601g, partial [Populus trichocarpa]
6 Hb_001754_200 0.1875552793 - - PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
7 Hb_003106_210 0.1932304377 - - PREDICTED: UDP-glycosyltransferase 74B1-like [Jatropha curcas]
8 Hb_000668_160 0.1976900753 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
9 Hb_001242_190 0.1988225617 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
10 Hb_002045_220 0.2013733018 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
11 Hb_000847_010 0.2022148052 - - PREDICTED: uncharacterized protein LOC102608064 [Citrus sinensis]
12 Hb_002218_070 0.2064518662 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
13 Hb_010261_030 0.2079358881 - - polyprotein [Citrus endogenous pararetrovirus]
14 Hb_067345_020 0.2095594028 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
15 Hb_005736_070 0.2109951764 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
16 Hb_000418_030 0.2122453992 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]
17 Hb_004007_230 0.2128550584 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
18 Hb_000563_120 0.2129716071 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
19 Hb_002571_010 0.2131054485 - - cationic amino acid transporter, putative [Ricinus communis]
20 Hb_002609_130 0.2145640424 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]

Gene co-expression network

sample Hb_004462_020 Hb_004462_020 Hb_002217_070 Hb_002217_070 Hb_004462_020--Hb_002217_070 Hb_002600_010 Hb_002600_010 Hb_004462_020--Hb_002600_010 Hb_000603_120 Hb_000603_120 Hb_004462_020--Hb_000603_120 Hb_001365_050 Hb_001365_050 Hb_004462_020--Hb_001365_050 Hb_001754_200 Hb_001754_200 Hb_004462_020--Hb_001754_200 Hb_003106_210 Hb_003106_210 Hb_004462_020--Hb_003106_210 Hb_004605_020 Hb_004605_020 Hb_002217_070--Hb_004605_020 Hb_073973_020 Hb_073973_020 Hb_002217_070--Hb_073973_020 Hb_002218_070 Hb_002218_070 Hb_002217_070--Hb_002218_070 Hb_003517_100 Hb_003517_100 Hb_002217_070--Hb_003517_100 Hb_000522_010 Hb_000522_010 Hb_002217_070--Hb_000522_010 Hb_000847_010 Hb_000847_010 Hb_002217_070--Hb_000847_010 Hb_000280_110 Hb_000280_110 Hb_002600_010--Hb_000280_110 Hb_004306_140 Hb_004306_140 Hb_002600_010--Hb_004306_140 Hb_002276_100 Hb_002276_100 Hb_002600_010--Hb_002276_100 Hb_009803_030 Hb_009803_030 Hb_002600_010--Hb_009803_030 Hb_007894_030 Hb_007894_030 Hb_002600_010--Hb_007894_030 Hb_000563_120 Hb_000563_120 Hb_002600_010--Hb_000563_120 Hb_001971_020 Hb_001971_020 Hb_000603_120--Hb_001971_020 Hb_085010_010 Hb_085010_010 Hb_000603_120--Hb_085010_010 Hb_010261_030 Hb_010261_030 Hb_000603_120--Hb_010261_030 Hb_043939_010 Hb_043939_010 Hb_000603_120--Hb_043939_010 Hb_000866_390 Hb_000866_390 Hb_000603_120--Hb_000866_390 Hb_000059_080 Hb_000059_080 Hb_000603_120--Hb_000059_080 Hb_001365_050--Hb_003106_210 Hb_006316_030 Hb_006316_030 Hb_001365_050--Hb_006316_030 Hb_043768_010 Hb_043768_010 Hb_001365_050--Hb_043768_010 Hb_000067_030 Hb_000067_030 Hb_001365_050--Hb_000067_030 Hb_007919_030 Hb_007919_030 Hb_001365_050--Hb_007919_030 Hb_000377_160 Hb_000377_160 Hb_001365_050--Hb_000377_160 Hb_000094_010 Hb_000094_010 Hb_001754_200--Hb_000094_010 Hb_002571_010 Hb_002571_010 Hb_001754_200--Hb_002571_010 Hb_003914_050 Hb_003914_050 Hb_001754_200--Hb_003914_050 Hb_000522_130 Hb_000522_130 Hb_001754_200--Hb_000522_130 Hb_033312_090 Hb_033312_090 Hb_001754_200--Hb_033312_090 Hb_065525_010 Hb_065525_010 Hb_001754_200--Hb_065525_010 Hb_003106_210--Hb_006316_030 Hb_003106_210--Hb_002218_070 Hb_006501_170 Hb_006501_170 Hb_003106_210--Hb_006501_170 Hb_003106_210--Hb_000067_030 Hb_107543_010 Hb_107543_010 Hb_003106_210--Hb_107543_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.336298 0.0321508 0.102202 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00965126 0.00759537 0.0438192 0.141328 0.162995

CAGE analysis