Hb_004464_040

Information

Type -
Description -
Location Contig4464: 7811-10441
Sequence    

Annotation

kegg
ID fve:101295381
description LRR receptor-like serine/threonine-protein kinase EFR-like
nr
ID KDP44808.1
description hypothetical protein JCGZ_01308 [Jatropha curcas]
swissprot
ID C0LGT6
description LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1
trembl
ID A0A067LC70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01308 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004464_040 0.0 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
2 Hb_000834_160 0.0412142293 - - hypothetical protein JCGZ_07239 [Jatropha curcas]
3 Hb_000210_020 0.0472557531 transcription factor TF Family: OFP Ovate family protein 13, putative [Theobroma cacao]
4 Hb_003598_070 0.0505821846 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002965_170 0.052533826 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
6 Hb_002284_290 0.0529652647 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
7 Hb_000297_190 0.0537092478 - - cell wall invertase [Manihot esculenta]
8 Hb_003836_040 0.0558226839 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
9 Hb_014056_020 0.0611141522 - - zinc finger protein, putative [Ricinus communis]
10 Hb_002304_030 0.0623127246 - - hypothetical protein JCGZ_21517 [Jatropha curcas]
11 Hb_005888_020 0.0632057599 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
12 Hb_001519_140 0.0649305148 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]
13 Hb_003605_170 0.0653209535 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
14 Hb_147976_010 0.067423998 - - -
15 Hb_005610_070 0.0682268457 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
16 Hb_006117_030 0.0684306781 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009692_050 0.0685516671 - - -
18 Hb_010288_070 0.0695884055 transcription factor TF Family: MYB MYB-like DNA-binding domain protein [Theobroma cacao]
19 Hb_000915_210 0.070474344 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005280_020 0.0706923817 - - glycine cleavage system h protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004464_040 Hb_004464_040 Hb_000834_160 Hb_000834_160 Hb_004464_040--Hb_000834_160 Hb_000210_020 Hb_000210_020 Hb_004464_040--Hb_000210_020 Hb_003598_070 Hb_003598_070 Hb_004464_040--Hb_003598_070 Hb_002965_170 Hb_002965_170 Hb_004464_040--Hb_002965_170 Hb_002284_290 Hb_002284_290 Hb_004464_040--Hb_002284_290 Hb_000297_190 Hb_000297_190 Hb_004464_040--Hb_000297_190 Hb_000834_160--Hb_003598_070 Hb_000834_160--Hb_002284_290 Hb_003836_040 Hb_003836_040 Hb_000834_160--Hb_003836_040 Hb_147976_010 Hb_147976_010 Hb_000834_160--Hb_147976_010 Hb_009692_050 Hb_009692_050 Hb_000834_160--Hb_009692_050 Hb_000210_020--Hb_003836_040 Hb_003605_170 Hb_003605_170 Hb_000210_020--Hb_003605_170 Hb_000210_020--Hb_002284_290 Hb_005797_020 Hb_005797_020 Hb_000210_020--Hb_005797_020 Hb_000053_010 Hb_000053_010 Hb_000210_020--Hb_000053_010 Hb_003598_070--Hb_147976_010 Hb_003598_070--Hb_002284_290 Hb_003598_070--Hb_009692_050 Hb_003598_070--Hb_003836_040 Hb_145502_010 Hb_145502_010 Hb_003598_070--Hb_145502_010 Hb_001519_140 Hb_001519_140 Hb_002965_170--Hb_001519_140 Hb_014056_020 Hb_014056_020 Hb_002965_170--Hb_014056_020 Hb_006117_030 Hb_006117_030 Hb_002965_170--Hb_006117_030 Hb_001205_220 Hb_001205_220 Hb_002965_170--Hb_001205_220 Hb_002965_170--Hb_000834_160 Hb_000915_210 Hb_000915_210 Hb_002965_170--Hb_000915_210 Hb_002284_290--Hb_009692_050 Hb_002284_290--Hb_003836_040 Hb_002284_290--Hb_147976_010 Hb_002284_290--Hb_003605_170 Hb_005888_020 Hb_005888_020 Hb_000297_190--Hb_005888_020 Hb_001170_020 Hb_001170_020 Hb_000297_190--Hb_001170_020 Hb_002304_030 Hb_002304_030 Hb_000297_190--Hb_002304_030 Hb_010288_070 Hb_010288_070 Hb_000297_190--Hb_010288_070 Hb_000297_190--Hb_003836_040 Hb_003050_380 Hb_003050_380 Hb_000297_190--Hb_003050_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.01979 0.313345 0 0.00689847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.979784

CAGE analysis