Hb_004466_040

Information

Type -
Description -
Location Contig4466: 75128-77166
Sequence    

Annotation

kegg
ID pmum:103337696
description protein RER1A-like
nr
ID XP_012469029.1
description PREDICTED: protein RER1B-like [Gossypium raimondii]
swissprot
ID Q54D10
description Protein RER1 homolog OS=Dictyostelium discoideum GN=rer1 PE=3 SV=1
trembl
ID A0A0D2NG96
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G005400 PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein rer1a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43073: 74778-91878
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004466_040 0.0 - - PREDICTED: protein RER1B-like [Gossypium raimondii]
2 Hb_012322_020 0.1046567043 - - -
3 Hb_086022_010 0.106508137 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
4 Hb_000103_310 0.1089047924 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
5 Hb_000608_110 0.1097121576 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
6 Hb_000696_010 0.1098710563 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
7 Hb_001124_020 0.1118396342 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
8 Hb_007951_040 0.1134622503 - - signal peptidase family protein [Populus trichocarpa]
9 Hb_162060_010 0.1165461901 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000022_050 0.118421454 - - PREDICTED: retinol dehydrogenase 11-like isoform X2 [Glycine max]
11 Hb_000146_050 0.1223069828 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
12 Hb_001500_110 0.1231019402 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_002235_210 0.1276228508 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]
14 Hb_000009_400 0.128289348 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
15 Hb_030736_020 0.1290346155 - - conserved hypothetical protein [Ricinus communis]
16 Hb_033286_010 0.1290540514 - - PREDICTED: probable beta-1,3-galactosyltransferase 14 [Jatropha curcas]
17 Hb_028707_080 0.1293283244 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
18 Hb_001882_050 0.1300211257 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
19 Hb_000890_230 0.1300572988 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
20 Hb_000556_150 0.1301444925 - - PREDICTED: fasciclin-like arabinogalactan protein 10 [Populus euphratica]

Gene co-expression network

sample Hb_004466_040 Hb_004466_040 Hb_012322_020 Hb_012322_020 Hb_004466_040--Hb_012322_020 Hb_086022_010 Hb_086022_010 Hb_004466_040--Hb_086022_010 Hb_000103_310 Hb_000103_310 Hb_004466_040--Hb_000103_310 Hb_000608_110 Hb_000608_110 Hb_004466_040--Hb_000608_110 Hb_000696_010 Hb_000696_010 Hb_004466_040--Hb_000696_010 Hb_001124_020 Hb_001124_020 Hb_004466_040--Hb_001124_020 Hb_000146_050 Hb_000146_050 Hb_012322_020--Hb_000146_050 Hb_000009_400 Hb_000009_400 Hb_012322_020--Hb_000009_400 Hb_001051_080 Hb_001051_080 Hb_012322_020--Hb_001051_080 Hb_001635_160 Hb_001635_160 Hb_012322_020--Hb_001635_160 Hb_172632_120 Hb_172632_120 Hb_012322_020--Hb_172632_120 Hb_002235_210 Hb_002235_210 Hb_012322_020--Hb_002235_210 Hb_002217_380 Hb_002217_380 Hb_086022_010--Hb_002217_380 Hb_086022_010--Hb_000608_110 Hb_000556_150 Hb_000556_150 Hb_086022_010--Hb_000556_150 Hb_008511_060 Hb_008511_060 Hb_086022_010--Hb_008511_060 Hb_007951_040 Hb_007951_040 Hb_086022_010--Hb_007951_040 Hb_033286_010 Hb_033286_010 Hb_000103_310--Hb_033286_010 Hb_005946_210 Hb_005946_210 Hb_000103_310--Hb_005946_210 Hb_003671_010 Hb_003671_010 Hb_000103_310--Hb_003671_010 Hb_002351_030 Hb_002351_030 Hb_000103_310--Hb_002351_030 Hb_162060_010 Hb_162060_010 Hb_000103_310--Hb_162060_010 Hb_002248_110 Hb_002248_110 Hb_000103_310--Hb_002248_110 Hb_001501_080 Hb_001501_080 Hb_000608_110--Hb_001501_080 Hb_000751_030 Hb_000751_030 Hb_000608_110--Hb_000751_030 Hb_000494_080 Hb_000494_080 Hb_000608_110--Hb_000494_080 Hb_000608_110--Hb_007951_040 Hb_000760_020 Hb_000760_020 Hb_000608_110--Hb_000760_020 Hb_000096_120 Hb_000096_120 Hb_000608_110--Hb_000096_120 Hb_001191_110 Hb_001191_110 Hb_000696_010--Hb_001191_110 Hb_000696_010--Hb_003671_010 Hb_000146_040 Hb_000146_040 Hb_000696_010--Hb_000146_040 Hb_002375_040 Hb_002375_040 Hb_000696_010--Hb_002375_040 Hb_005797_010 Hb_005797_010 Hb_000696_010--Hb_005797_010 Hb_000696_010--Hb_033286_010 Hb_012796_020 Hb_012796_020 Hb_001124_020--Hb_012796_020 Hb_082821_010 Hb_082821_010 Hb_001124_020--Hb_082821_010 Hb_001699_100 Hb_001699_100 Hb_001124_020--Hb_001699_100 Hb_001633_130 Hb_001633_130 Hb_001124_020--Hb_001633_130 Hb_001575_070 Hb_001575_070 Hb_001124_020--Hb_001575_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.5925 24.0577 37.9574 91.6141 58.2545 50.9444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.051 30.9298 19.392 19.7786 18.914

CAGE analysis