Hb_004466_080

Information

Type -
Description -
Location Contig4466: 107858-108908
Sequence    

Annotation

kegg
ID rcu:RCOM_1447510
description AMP-activated protein kinase, gamma regulatory subunit, putative
nr
ID XP_012067247.1
description PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L009
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26789 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004466_080 0.0 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
2 Hb_025654_010 0.0139349833 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
3 Hb_011540_050 0.0154545538 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_187301_010 0.0157503284 - - PREDICTED: uncharacterized protein LOC105629082 [Jatropha curcas]
5 Hb_001681_010 0.0190359683 - - PREDICTED: cytochrome P450 81E8-like isoform X1 [Populus euphratica]
6 Hb_000088_280 0.01922832 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
7 Hb_184398_010 0.0228202493 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
8 Hb_003370_040 0.0236074272 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
9 Hb_001192_020 0.0253154767 - - -
10 Hb_020956_050 0.0364644209 - - PREDICTED: uncharacterized protein LOC102670328 [Glycine max]
11 Hb_008021_030 0.0394611249 - - short-chain dehydrogenase, putative [Ricinus communis]
12 Hb_001140_310 0.0404194535 - - hypothetical protein AMTR_s00025p00025050 [Amborella trichopoda]
13 Hb_004528_030 0.0404237099 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
14 Hb_135174_010 0.0404483346 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
15 Hb_003653_040 0.0450270698 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
16 Hb_001148_010 0.0481772433 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
17 Hb_003060_130 0.0639052187 - - PREDICTED: protein P21-like [Jatropha curcas]
18 Hb_000202_110 0.0643858519 - - PREDICTED: uncharacterized protein LOC103948916 [Pyrus x bretschneideri]
19 Hb_000010_230 0.0725804119 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
20 Hb_002874_250 0.0743304665 - - -

Gene co-expression network

sample Hb_004466_080 Hb_004466_080 Hb_025654_010 Hb_025654_010 Hb_004466_080--Hb_025654_010 Hb_011540_050 Hb_011540_050 Hb_004466_080--Hb_011540_050 Hb_187301_010 Hb_187301_010 Hb_004466_080--Hb_187301_010 Hb_001681_010 Hb_001681_010 Hb_004466_080--Hb_001681_010 Hb_000088_280 Hb_000088_280 Hb_004466_080--Hb_000088_280 Hb_184398_010 Hb_184398_010 Hb_004466_080--Hb_184398_010 Hb_025654_010--Hb_011540_050 Hb_025654_010--Hb_187301_010 Hb_025654_010--Hb_000088_280 Hb_003370_040 Hb_003370_040 Hb_025654_010--Hb_003370_040 Hb_001192_020 Hb_001192_020 Hb_025654_010--Hb_001192_020 Hb_011540_050--Hb_187301_010 Hb_011540_050--Hb_000088_280 Hb_011540_050--Hb_003370_040 Hb_011540_050--Hb_001192_020 Hb_187301_010--Hb_000088_280 Hb_187301_010--Hb_003370_040 Hb_187301_010--Hb_001192_020 Hb_001681_010--Hb_184398_010 Hb_001681_010--Hb_025654_010 Hb_001681_010--Hb_011540_050 Hb_001681_010--Hb_187301_010 Hb_001681_010--Hb_000088_280 Hb_000088_280--Hb_003370_040 Hb_000088_280--Hb_001192_020 Hb_020956_050 Hb_020956_050 Hb_000088_280--Hb_020956_050 Hb_184398_010--Hb_025654_010 Hb_184398_010--Hb_011540_050 Hb_184398_010--Hb_187301_010 Hb_184398_010--Hb_000088_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.075476 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.425602

CAGE analysis